View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_low_4 (Length: 576)
Name: NF11954_low_4
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 15 - 547
Target Start/End: Complemental strand, 6938506 - 6937974
Alignment:
| Q |
15 |
ttggcctatgatgcctacctatgcgactatagagcagttatagttccatttatttttgtcataaattagggtttacaatgttataacaaatatatatagt |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6938506 |
ttggcctatgatgcctacctatgcgactatagaacagttatagttccatttatttttgtcataaattagggtttacaatgttataacaaatatatatagt |
6938407 |
T |
|
| Q |
115 |
actttggttcagtttacactttacaataatacacctgaaccgtactgcaagaggcgaacaacaattgggactaacacacgtttgggccaaactcaagggc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6938406 |
actttggttcagtttacactttacaataatacacctgaaccgtactgcaagaggcgaacaacaattgggactaacacacgtttgggccaaactcaagggc |
6938307 |
T |
|
| Q |
215 |
aggagcagagggagtttcacaattctccactagctttgctccttctctgccccttgtccctcattgctgtatatatgagcaatactcaacagttataagc |
314 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6938306 |
aggagcagagggagtttcacaatgctccactagctttgctccttctccgccccttgtccctcattgctgtatatatgagcaatactcaacagttataagc |
6938207 |
T |
|
| Q |
315 |
tcaaataagtcaattcaaaagatacgtttaattggggttggttgtgcataaaacctaactgtttctgtcaccgaaaaaagggtctttctttgaaggcgtg |
414 |
Q |
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| T |
6938206 |
tcaaataagtcaattcaaaagatacgtttaattggggttggttgtgcataaaacctaactgtttctgtcaccgaaaaaagggtctttctttgaaggcgtg |
6938107 |
T |
|
| Q |
415 |
acttattggccttatagtggtaattcacttttgaaaaggaaaaaatgaagagttccaatcttaaattgaaaaactaatggttttaaagttaatttcttat |
514 |
Q |
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| T |
6938106 |
acttattggccttatagtggtaattcacttttgaaaaggaaaaaataaagagttccaatcttaaattgaaaaactaatggttttaaagttaatttcttat |
6938007 |
T |
|
| Q |
515 |
atccaattatatgtttctaatctacacacctgg |
547 |
Q |
| |
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| T |
6938006 |
atccaattatatgtttctaatctacacacctgg |
6937974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 39129470 - 39129407
Alignment:
| Q |
40 |
actatagagcagttatagttccatttatttttgtcataaattagggtttacaatgttataacaa |
103 |
Q |
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|||||||||||||||||||| | | ||||||||| || ||||||| |||||| ||||| ||||| |
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| T |
39129470 |
actatagagcagttatagtttcgtatatttttgtaatgaattaggttttacagtgttacaacaa |
39129407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 34344273 - 34344377
Alignment:
| Q |
28 |
cctacctatgcgactatagagcagttatagttccatttatttttgtcataaattagggtttacaatgttataacaaatatatatagtactttggttcagt |
127 |
Q |
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||||||| || |||||||||||| |||||| ||||||||| ||| || |||||||||||||| |||| ||| |||||||| | ||||| |||||||| |
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| T |
34344273 |
cctacctctgtgactatagagcaccgatagttacatttatttctgtgatgaattagggtttacagcgttacaaccaatatatacaatacttcggttcagt |
34344372 |
T |
|
| Q |
128 |
ttaca |
132 |
Q |
| |
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||||| |
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| T |
34344373 |
ttaca |
34344377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23849893 - 23849784
Alignment:
| Q |
1 |
tttgttcacgcagtttggcctatgatgcctacctatgcgactatagagcagttatagttccatttatttttgtcataaattagggtttacaatgttataa |
100 |
Q |
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||||||||||||||| |||| ||| |||||||| | |||||||| |||||| |||||| ||||||| ||| || ||| |||||||||| ||||| || |
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| T |
23849893 |
tttgttcacgcagttcggccaatggtgcctacccttacgactataaagcagtcatagttttgtttatttctgttatgaatcagggtttacattgttacaa |
23849794 |
T |
|
| Q |
101 |
caaatatata |
110 |
Q |
| |
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| || ||||| |
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| T |
23849793 |
ccaagatata |
23849784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 42500882 - 42500844
Alignment:
| Q |
175 |
acaattgggactaacacacgtttgggccaaactcaaggg |
213 |
Q |
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||||||||| |||||||||||||||||||||| |||||| |
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| T |
42500882 |
acaattgggcctaacacacgtttgggccaaacccaaggg |
42500844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 54619042 - 54619100
Alignment:
| Q |
176 |
caattgggactaacacacgtttgggccaaactcaagggcaggagcagagggagtttcac |
234 |
Q |
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| T |
54619042 |
caattggacctaacacacgttttgaccaaacacaagggcaggggcagagggagcttcac |
54619100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 35223381 - 35223434
Alignment:
| Q |
14 |
tttggcctatgatgcctacctatgcgactatagagcagttatagttccatttat |
67 |
Q |
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||||||| ||| |||||| || |||||||||||||||| ||||||||| ||||| |
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| T |
35223381 |
tttggccaatggtgcctatctctgcgactatagagcagctatagttccgtttat |
35223434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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