View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_low_5 (Length: 561)
Name: NF11954_low_5
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Complemental strand, 53557714 - 53557182
Alignment:
| Q |
18 |
caataatggaccacctatagttatatagatgaaattaatttaattagttgagaagaaaggattctaacatggtgagattctagtgacaaagaaaaaagac |
117 |
Q |
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| T |
53557714 |
caataatggaccacctatagttatatagatacaattaatttaattagttgagaagaaaggattctaacatggtgagattctagtgacaaagaaaaaagac |
53557615 |
T |
|
| Q |
118 |
aaacagtagtatgttgtagagatggagaaatttgaggatagacaaggacctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttca |
217 |
Q |
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| T |
53557614 |
aaacagtagtatgttgtagagatggagaaatttgaggatagacaaggacctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttca |
53557515 |
T |
|
| Q |
218 |
gtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatctcttgagccctgtgaattttttgtaattat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557514 |
gtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatctcttgagccctgtgaattttttgtaattat |
53557415 |
T |
|
| Q |
318 |
cccattaattagtttgcactaatccaagattactattataatcaaaatagtttcaagtttccatatactacaaaattagagatagatttcacataatttt |
417 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557414 |
cccattaattagtttgcactaaaccaagattactattataatcaaaatagtttcaagtttccatatactacaaaattagagatagatttcacataatttt |
53557315 |
T |
|
| Q |
418 |
ctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaaacccagatgaaaaaagtacaagaggtactacgaccacaaagagaaaat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557314 |
ctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaaactcagatgaaaaaagtacaagaggtactacgaccacaaagagaaaat |
53557215 |
T |
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| Q |
518 |
aataattcccttgtgatcaatacatgcatataa |
550 |
Q |
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| T |
53557214 |
aataattcccttgtgatcaatacatacatataa |
53557182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 4685783 - 4685705
Alignment:
| Q |
165 |
acctgcttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
243 |
Q |
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||||||||||||| || ||||||||||||||||| ||||| ||||||||||| | || ||||||||||||| |||||| |
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| T |
4685783 |
acctgcttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaaccaccatgtttgagattagg |
4685705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 47846787 - 47846845
Alignment:
| Q |
185 |
taaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
243 |
Q |
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|||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||| |
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| T |
47846787 |
taaaggctgcaaatgatgttgtcttcttcttcggtgaaaccaccgtgcttgatgttagg |
47846845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 291
Target Start/End: Complemental strand, 5113599 - 5113496
Alignment:
| Q |
188 |
aggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatc |
287 |
Q |
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||||||||||| |||| |||||||||||| | || ||||||||||| ||||| ||||| | ||||||||||| ||||| | || || || ||||||| |
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| T |
5113599 |
aggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatc |
5113500 |
T |
|
| Q |
288 |
tctt |
291 |
Q |
| |
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|||| |
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| T |
5113499 |
tctt |
5113496 |
T |
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