View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11954_low_7 (Length: 408)

Name: NF11954_low_7
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11954_low_7
NF11954_low_7
[»] chr7 (8 HSPs)
chr7 (2-156)||(15932651-15932805)
chr7 (2-156)||(15940993-15941147)
chr7 (26-156)||(7157650-7157779)
chr7 (244-305)||(15932502-15932563)
chr7 (244-305)||(15940844-15940905)
chr7 (30-141)||(47921883-47921994)
chr7 (244-287)||(47922098-47922141)
chr7 (253-305)||(7157501-7157553)
[»] chr3 (6 HSPs)
chr3 (23-156)||(11177728-11177861)
chr3 (244-305)||(11177949-11178010)
chr3 (2-153)||(23046549-23046698)
chr3 (270-305)||(23046405-23046440)
chr3 (71-107)||(3793419-3793455)
chr3 (71-107)||(3831604-3831640)
[»] scaffold1661 (2 HSPs)
scaffold1661 (23-156)||(154-287)
scaffold1661 (244-305)||(375-436)
[»] scaffold0029 (5 HSPs)
scaffold0029 (23-156)||(88644-88777)
scaffold0029 (244-305)||(88865-88926)
scaffold0029 (244-305)||(77258-77319)
scaffold0029 (23-61)||(77093-77131)
scaffold0029 (118-156)||(77132-77170)
[»] chr8 (3 HSPs)
chr8 (2-156)||(19901800-19901954)
chr8 (245-305)||(19902043-19902103)
chr8 (257-305)||(40755910-40755958)
[»] chr5 (6 HSPs)
chr5 (2-156)||(20934271-20934425)
chr5 (2-156)||(34657071-34657224)
chr5 (244-305)||(20934513-20934574)
chr5 (8-85)||(19183853-19183930)
chr5 (244-305)||(34656922-34656983)
chr5 (1-117)||(31232256-31232371)
[»] chr4 (4 HSPs)
chr4 (2-153)||(11164086-11164236)
chr4 (2-143)||(50881664-50881807)
chr4 (244-301)||(11163937-11163994)
chr4 (2-140)||(16635628-16635766)
[»] scaffold0226 (2 HSPs)
scaffold0226 (26-153)||(3515-3642)
scaffold0226 (252-305)||(3364-3417)
[»] scaffold0059 (2 HSPs)
scaffold0059 (26-148)||(39161-39283)
scaffold0059 (252-305)||(39386-39439)
[»] chr2 (2 HSPs)
chr2 (2-125)||(23689284-23689407)
chr2 (254-306)||(7752726-7752778)
[»] scaffold0453 (2 HSPs)
scaffold0453 (2-128)||(9609-9735)
scaffold0453 (244-305)||(9432-9493)
[»] scaffold1407 (1 HSPs)
scaffold1407 (2-83)||(1334-1415)
[»] scaffold0334 (2 HSPs)
scaffold0334 (25-153)||(16110-16237)
scaffold0334 (244-305)||(15956-16017)
[»] scaffold0177 (1 HSPs)
scaffold0177 (29-83)||(32430-32484)
[»] chr1 (3 HSPs)
chr1 (23-107)||(17951073-17951157)
chr1 (2-51)||(7589082-7589131)
chr1 (258-303)||(24067936-24067981)
[»] scaffold0267 (1 HSPs)
scaffold0267 (71-107)||(8367-8403)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 15932805 - 15932651
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggag 101  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15932805 tctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggag 15932706  T
Q  102 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15932705 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 15932651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 15941147 - 15940993
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggag 101  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15941147 tctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggag 15941048  T
Q  102 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15941047 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 15940993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 7157779 - 7157650
Alignment:
Q  26 caactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactg 125  Q
    |||||||||| | ||||| ||||||||||   |||||| | ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  7157779 caactgagttttccaggtttatttataggttgaaatctgc-ctgaagtgcgtctgatcatgtctcaagtagtggagaaaacgaaggaagtgggcaaactg 7157681  T
Q  126 cttctgaaacgtggggaaagaataggtcagg 156  Q
    ||||||||| ||||||||||||| |||||||    
T  7157680 cttctgaaaagtggggaaagaattggtcagg 7157650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 15932563 - 15932502
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15932563 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 15932502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 15940905 - 15940844
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15940905 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 15940844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 47921883 - 47921994
Alignment:
Q  30 tgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttc 129  Q
    |||||| | ||||| ||||||||||   |||||| | ||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||| |||||    
T  47921883 tgagttttccaggtttatttataggctgaaatctgccctgaagtgcttctgatcatgtcttaagtagtggaaaaaatgatggaagtgggcaaacggcttc 47921982  T
Q  130 tgaaacgtgggg 141  Q
    ||||||||||||    
T  47921983 tgaaacgtgggg 47921994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 47922098 - 47922141
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacaca 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  47922098 gacgcgcggagacctttaaccgataaatacctgaaatagacaca 47922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 7157553 - 7157501
Alignment:
Q  253 agacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||||||| |||||||||| ||||||||||||| ||||| |||||||||    
T  7157553 agacctttaaccaataaatacctaaaatagacacacaataccagcataacatt 7157501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 11177728 - 11177861
Alignment:
Q  23 cttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11177728 cttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaa 11177827  T
Q  123 ctgcttctgaaacgtggggaaagaataggtcagg 156  Q
    ||||||||||||||||||||||||||||||||||    
T  11177828 ctgcttctgaaacgtggggaaagaataggtcagg 11177861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 11177949 - 11178010
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11177949 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 11178010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 23046698 - 23046549
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatg-tctcaagtagtgga 100  Q
    ||||||||| |  ||||||  ||||||||||||||||||||| ||||||||||||||||||| |||| ||||| | ||||||||| ||||||  ||||||    
T  23046698 tctctctaatatgcttggtgtcttcaactgagttcttcaggtttatttatagggaaaaatctgctctcaagtgttcctgatcatgttctcaa-cagtgga 23046600  T
Q  101 gaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtc 153  Q
    ||||||| || ||||| | ||||||||| | |||||| |||||||||| ||||    
T  23046599 gaaaatggaggaagtgagaaaactgctt-ttaaacgt-gggaaagaattggtc 23046549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 305
Target Start/End: Complemental strand, 23046440 - 23046405
Alignment:
Q  270 atacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||||||||||||||| |||||||||||||||    
T  23046440 atacctgaaatagacacacaataccaacataacatt 23046405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 3793419 - 3793455
Alignment:
Q  71 agtgcttctgatcatgtctcaagtagtggagaaaatg 107  Q
    |||||||||||||||||||||||  ||||||||||||    
T  3793419 agtgcttctgatcatgtctcaagaggtggagaaaatg 3793455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 3831604 - 3831640
Alignment:
Q  71 agtgcttctgatcatgtctcaagtagtggagaaaatg 107  Q
    |||||||||||||||||||||||  ||||||||||||    
T  3831604 agtgcttctgatcatgtctcaagaggtggagaaaatg 3831640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1661 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: scaffold1661
Description:

Target: scaffold1661; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 154 - 287
Alignment:
Q  23 cttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  154 cttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaa 253  T
Q  123 ctgcttctgaaacgtggggaaagaataggtcagg 156  Q
    |||||||||||||||||| |||||||||||||||    
T  254 ctgcttctgaaacgtgggaaaagaataggtcagg 287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1661; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 375 - 436
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  375 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaaaataacatt 436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 126; Significance: 7e-65; HSPs: 5)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 88644 - 88777
Alignment:
Q  23 cttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88644 cttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaa 88743  T
Q  123 ctgcttctgaaacgtggggaaagaataggtcagg 156  Q
    |||||||||||||||||| |||||||||||||||    
T  88744 ctgcttctgaaacgtgggaaaagaataggtcagg 88777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 88865 - 88926
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  88865 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccagcataacatt 88926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 77258 - 77319
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  77258 gacgcgcggagacctttaactgataaatacctgaaatagacacacactaccagcataacatt 77319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 77093 - 77131
Alignment:
Q  23 cttcaactgagttcttcaggtctatttatagggaaaaat 61  Q
    |||||||||||||||||||||||||||||||||||||||    
T  77093 cttcaactgagttcttcaggtctatttatagggaaaaat 77131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 77132 - 77170
Alignment:
Q  118 gcaaactgcttctgaaacgtggggaaagaataggtcagg 156  Q
    |||||||||||||||||||||||||||||||||||||||    
T  77132 gcaaactgcttctgaaacgtggggaaagaataggtcagg 77170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 19901800 - 19901954
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggag 101  Q
    |||||||||||  ||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  19901800 tctctctaaaatgcttggtgtattcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttccgatcatgtctcaagtagtggag 19901899  T
Q  102 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 156  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19901900 aaaatgaagaaagtgggcaaactgcttctaaaacgtggggaaagaataggtcagg 19901954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 19902043 - 19902103
Alignment:
Q  245 acgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19902043 acgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 19902103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 40755958 - 40755910
Alignment:
Q  257 ctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||||| |||| ||||||||||||||||| ||||| |||||||||    
T  40755958 ctttaaccgacaaatgcctgaaatagacacacaataccagcataacatt 40755910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 20934271 - 20934425
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggag 101  Q
    |||||||||||  ||||||   |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  20934271 tctctctaaaatgcttggtgtattcaactgagttcttcaggtctatttatagagaaaaatctgctctgaagtgcttctgatcatatctcaagtagtggag 20934370  T
Q  102 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20934371 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 20934425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 34657224 - 34657071
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggag 101  Q
    |||||||||||| ||||||  |  |||||||||| | ||||| ||||||||||   |||||| | |||||||||||||||||||||||||||||||||||    
T  34657224 tctctctaaaaagcttggtgtccacaactgagttttccaggtttatttataggctgaaatctgc-ctgaagtgcttctgatcatgtctcaagtagtggag 34657126  T
Q  102 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 156  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  34657125 aaaatgaaggaagtgggcaaactgcttctgaaacgtggggaaagaattggtcagg 34657071  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 20934513 - 20934574
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20934513 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccgacataacatt 20934574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 19183930 - 19183853
Alignment:
Q  8 taaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcat 85  Q
    |||||| ||||||  ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||    
T  19183930 taaaaagcttggtgtcttcaactgagttcttcaggtttatttatggggaaaaatctgctctgaagtgcttctggtcat 19183853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 34656983 - 34656922
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  34656983 gacgcgtggagacctttaaccgataaatacctgaaatagacacacaataccagcataacatt 34656922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31232371 - 31232256
Alignment:
Q  1 atctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaa-tctcctctgaagtgcttctgatcatgtctcaagtagtgg 99  Q
    |||||| |||||| |||||| |||||||||||||| || || | |||||||||| ||||| | | |||||| |||||||||||||  || |||| |||||    
T  31232371 atctctttaaaaagcttggtgccttcaactgagtttttaagtt-tatttataggcaaaaaatatgctctga-gtgcttctgatcacatcccaagcagtgg 31232274  T
Q  100 agaaaatgaagaaagtgg 117  Q
    ||||||||||| ||||||    
T  31232273 agaaaatgaaggaagtgg 31232256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 11164236 - 11164086
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggag 101  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||||    
T  11164236 tctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgttcctagtagtggag 11164137  T
Q  102 aaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtc 153  Q
    |||||| || ||||| | ||||||||| | |||||| |||||||||| ||||    
T  11164136 aaaatggaggaagtgagaaaactgcttttcaaacgt-gggaaagaattggtc 11164086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 50881664 - 50881807
Alignment:
Q  2 tctctctaaaaaa-cttggtcccttcaactgagttcttcaggtctatttatagggaaaaa-tctcctctgaagtgcttctgatcatgtctcaagtagtgg 99  Q
    ||||||||||||  |||||| |||||||||||||  || ||||||||||||||| ||||| ||| || |||||||| |||||||||||||||||| ||||    
T  50881664 tctctctaaaaatgcttggtgccttcaactgagtctttaaggtctatttataggcaaaaaatctgctttgaagtgcctctgatcatgtctcaagtggtgg 50881763  T
Q  100 agaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaa 143  Q
    ||||||||  | || || || ||||| |||||||||||||||||    
T  50881764 agaaaatgttggaattgagccaactgattctgaaacgtggggaa 50881807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 11163994 - 11163937
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataa 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  11163994 gacgcgcggagacctttaaccgataaatacctgaaatagacacacaataccagcataa 11163937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 140
Target Start/End: Complemental strand, 16635766 - 16635628
Alignment:
Q  2 tctctctaaaaaa-cttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatg-tctcaagtagtgg 99  Q
    ||||||||||||| ||||||  |||||||||| ||||| ||||||||||||| |||||||||  ||||||| |||||||||||||| |||| ||||||||    
T  16635766 tctctctaaaaaagcttggtgtcttcaactgaattctttaggtctatttata-ggaaaaatcggctctgaaatgcttctgatcatgttctc-agtagtgg 16635669  T
Q  100 agaaaatgaagaaagtgggcaaactgcttctgaaacgtggg 140  Q
    |||||||  || ||||| | |||||| ||  ||||||||||    
T  16635668 agaaaatagaggaagtgagaaaactgattacgaaacgtggg 16635628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 3642 - 3515
Alignment:
Q  26 caactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactg 125  Q
    |||||||||| | ||||| ||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  3642 caactgagttttccaggtttatttataggctgaaatctgccctgaagtgcttctgatcatgtctcaagtagtggagaaaatggaggaagtgggcaaactg 3543  T
Q  126 cttctgaaacgtggggaaagaataggtc 153  Q
    ||||||||| ||||||||||||| ||||    
T  3542 cttctgaaatgtggggaaagaattggtc 3515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 3417 - 3364
Alignment:
Q  252 gagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  3417 gagacctttaactgataaatacctgaaatagacacacaataccagcataacatt 3364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 39161 - 39283
Alignment:
Q  26 caactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactg 125  Q
    |||||||||| | || || ||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  39161 caactgagttttccaagtttatttataggctgaaatctgccctgaagtgcttctgatcatgtctcaagtagtggagaaaatggaggaagtgggcaaactg 39260  T
Q  126 cttctgaaacgtggggaaagaat 148  Q
    ||||||||| |||||||||||||    
T  39261 cttctgaaatgtggggaaagaat 39283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 39386 - 39439
Alignment:
Q  252 gagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||    
T  39386 gagaccttaaacagataaatacctgaaatagacacacaataccagcataacatt 39439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 23689407 - 23689284
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggag 101  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||  |||||||| ||||||||||||    
T  23689407 tctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttcatatcatgtcccaagtagtggag 23689308  T
Q  102 aaaatgaagaaagtgggcaaactg 125  Q
    || ||| || ||||| | ||||||    
T  23689307 aatatggaggaagtgagaaaactg 23689284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7752778 - 7752726
Alignment:
Q  254 gacctttaaccgataaatacctgaaatagacacacactaccaacataacatta 306  Q
    ||||||||| |||||||||  ||||||| ||||||| || |||||||||||||    
T  7752778 gacctttaatcgataaatatttgaaataaacacacaatatcaacataacatta 7752726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 9735 - 9609
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggag 101  Q
    ||||||| |||| ||||||  | |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||  | ||||||||||    
T  9735 tctctctgaaaagcttggtgtcatcaactgagttcttcaagtctatttatagggaaaaatctgctttgaagtgcttctgatcatgttcctagtagtggag 9636  T
Q  102 aaaatgaagaaagtgggcaaactgctt 128  Q
    |||||| || ||||| | |||||||||    
T  9635 aaaatggaggaagtgagaaaactgctt 9609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 9493 - 9432
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||| ||||| |||||||||    
T  9493 gacgcgcggagacctataaccaataaatacccgaaatagacacacaataccagcataacatt 9432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1407 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 1334 - 1415
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatc 83  Q
    |||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1334 tctctctaaaaagcttgcccctttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatc 1415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 16237 - 16110
Alignment:
Q  25 tcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaact 124  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||  | |||||||||||||||| || ||||| | |||||    
T  16237 tcaactgagttcttcaggtctatttatagagaaaaatctgctttgaagtgcttctgatcatgttcctagtagtggagaaaatggagcaagtgagaaaact 16138  T
Q  125 gcttctgaaacgtggggaaagaataggtc 153  Q
    |||| | || ||| |||||||||| ||||    
T  16137 gcttttcaatcgt-gggaaagaattggtc 16110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 16017 - 15956
Alignment:
Q  244 gacgcgcggagacctttaaccgataaatacctgaaatagacacacactaccaacataacatt 305  Q
    |||||||  ||||||||||||||||||||  ||||||||||||||| ||||| |||||||||    
T  16017 gacgcgcaaagacctttaaccgataaatatttgaaatagacacacaataccagcataacatt 15956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 32484 - 32430
Alignment:
Q  29 ctgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32484 ctgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatc 32430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 17951073 - 17951157
Alignment:
Q  23 cttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatcatgtctcaagtagtggagaaaatg 107  Q
    ||||||||||||| |  |||| ||||||||||  |||||   |||||||||||||||||||||||| ||||||||||||||||||    
T  17951073 cttcaactgagttttcaaggtttatttataggataaaattggctctgaagtgcttctgatcatgtcccaagtagtggagaaaatg 17951157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 7589082 - 7589131
Alignment:
Q  2 tctctctaaaaaacttggtcccttcaactgagttcttcaggtctatttat 51  Q
    |||||||| ||| |||||| ||||||| ||||||||||| ||||||||||    
T  7589082 tctctctagaaagcttggtgccttcaaatgagttcttcatgtctatttat 7589131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Complemental strand, 24067981 - 24067936
Alignment:
Q  258 tttaaccgataaatacctgaaatagacacacactaccaacataaca 303  Q
    ||||| ||| |||| ||||||||||||||||| |||||||||||||    
T  24067981 tttaatcgacaaatgcctgaaatagacacacaataccaacataaca 24067936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 8367 - 8403
Alignment:
Q  71 agtgcttctgatcatgtctcaagtagtggagaaaatg 107  Q
    |||||||||||||||||||||||  ||||||||||||    
T  8367 agtgcttctgatcatgtctcaagaggtggagaaaatg 8403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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