View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11954_low_8 (Length: 400)
Name: NF11954_low_8
Description: NF11954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11954_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 51389204 - 51389415
Alignment:
| Q |
24 |
ttttttatgcctgctttgtaagtctagcaatggttgcacttgcgtcagcatgcttatatatgagcctatttatacattacgtgggtgtggctgagtggta |
123 |
Q |
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| T |
51389204 |
ttttttatgcctgctttgtaagtctagcaatggttgcacttgcgtcagcatgcttatatatgtgcctatttatacattacgtgggtgtggctgagtggta |
51389303 |
T |
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| Q |
124 |
cataaagtgacaacaaagaccaatgcaaaaggtttctacttggcttgatgtggaacaatggttttcaatgctttacacacctatagcttgctattccctg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
51389304 |
cataaagtgacaacaaagaccaatgcaaaaggtttctacttggcttgatgtggaacaatggtcttcaatgctttacacaactatagcttgctattccctg |
51389403 |
T |
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| Q |
224 |
tttaccaagaca |
235 |
Q |
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|||||||||||| |
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| T |
51389404 |
tttaccaagaca |
51389415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 51387583 - 51387701
Alignment:
| Q |
24 |
ttttttatgcctgctttgtaagtctagcaatggttgcacttgcgtcagcatgcttatatatgagcctatttatacattacgtgggtgtggctgagtggta |
123 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||| || |||||||||||||||| ||||||||||||| || |
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| T |
51387583 |
ttttttatgcctgctttgtaagtcttgcaatggttgcacttgcgtcagcacacttatgcatgtgcatatttatacattacgtccgtgtggctgagtgata |
51387682 |
T |
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| Q |
124 |
cataaagtgacaacaaaga |
142 |
Q |
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| T |
51387683 |
cataaagtgacaacaaaga |
51387701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 26594729 - 26594666
Alignment:
| Q |
242 |
ttaatgagagatgatacatggacaaacttatgtggcaa-ataccactctacacctctcccatat |
304 |
Q |
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| T |
26594729 |
ttaatgagagatgatacatggacacacttatgtggcaacataccactctacacctctctcatat |
26594666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 47952726 - 47952675
Alignment:
| Q |
246 |
tgagagatgatacatggacaaacttatgtggcaa-ataccactctacacctc |
296 |
Q |
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||||||||||||| | |||| ||||||||||||| ||||||||||||||||| |
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| T |
47952726 |
tgagagatgatacgttgacacacttatgtggcaacataccactctacacctc |
47952675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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