View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_high_12 (Length: 457)
Name: NF11955_high_12
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 84 - 444
Target Start/End: Complemental strand, 50631419 - 50631062
Alignment:
| Q |
84 |
gatccagtcaataatggaaaattaaaaatgaaatagtcttaaagaagttttttggaactcacattgtcgagattttcaaactattataggtatgtgagac |
183 |
Q |
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| T |
50631419 |
gatccagtcaataatggaaaattaaaaatgaaatagtcttaaagaagttttttggaactcacattgtcgagattttcaaactattatatgtatgtgagac |
50631320 |
T |
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| Q |
184 |
ccccaaatgtcattagctagtttttggaagtgatgccaagctcgtctaatgtggtagcaaaactaggttaaggatgacaatagggaattagacccaggag |
283 |
Q |
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| T |
50631319 |
ccccaaatgtcattagctagtttttggaagtgatgccaagctcgtctaatgtggtagcaaaactaggttaaggatgacaatagggaattagacccaggaa |
50631220 |
T |
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| Q |
284 |
cttagataagtgtgagctcgggtattaaagttggagttccacattggcaaggttctcaaattgttggatgaatatatgtgtgtggggcattatcatctaa |
383 |
Q |
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| T |
50631219 |
cttggataagtgtgagctcgggtattaaagttggagttccacattggcaaggttctcaaattattggatgaatatgtgtgt---gggcatcatcatctaa |
50631123 |
T |
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| Q |
384 |
tgagctaacttttaagagcgatattcatttagttggagtatttatttaacatgcacttcct |
444 |
Q |
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| T |
50631122 |
tgagctaacttttaagagcgatattcatttagttggagtatttaattaacatgcacttcct |
50631062 |
T |
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