View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_high_16 (Length: 254)
Name: NF11955_high_16
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 5949897 - 5949681
Alignment:
| Q |
17 |
agacacatcataaaaccaccaattatcaccaacaggctgtgttttactctcacaagacattccattcaacaactcatgttcctcttgatttttcgcgtca |
116 |
Q |
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| T |
5949897 |
agacacatcataaaaccaccaattatcaccaacagactgtggtttactctcacaagacattccattcaacaactcatgttcctcttgatttttcgcgtca |
5949798 |
T |
|
| Q |
117 |
ttacggcctgtcacttgccaattgaacaaatctggatccgaacaagccttcatagccaaggaatcaatgcatctagaaaaaatatggagatcttctgcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5949797 |
ttacggcctgtcacttgccaattgaacaaatctggatccgaacaagccttcatagccaaggaatcaatgcatctagaaaaaatatggagatcttctgcaa |
5949698 |
T |
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| Q |
217 |
agttttgcacttcctcg |
233 |
Q |
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||||||||||||||||| |
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| T |
5949697 |
agttttgcacttcctcg |
5949681 |
T |
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