View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11955_low_1 (Length: 893)
Name: NF11955_low_1
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 520
Target Start/End: Complemental strand, 3990298 - 3989805
Alignment:
| Q |
15 |
agcataggtgatgtaatttcattaaaaaagagatgtcagtgttgtaaatcacacaattgagaaataggtttcacagatctctgagtcatgttgaagaagg |
114 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990298 |
agcataggtaatgtaatttcattaaaaa-gagatgttagtgttgtaaatcacacaattgagaaataggtttcacagatctctgagtcatgttgaagaagg |
3990200 |
T |
|
| Q |
115 |
aagagaagaatgaattaaagaaggaattaaatgggtttcacgcatagttttgtgaatttcatattgaagaatgaagagaagg-attggaacaatttaggt |
213 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3990199 |
aagagaagaatgaattaaa------------tggatttcacgcatagttttgtgaatttcatatcgaagaatgaagagaagggattggaacaatttaggt |
3990112 |
T |
|
| Q |
214 |
tgaatgggaacaaactcttgtgagtttgtgatttgtcgtaaaggagatgaagttattttcttctaatatatgaccaagggtaaattaattaagaagaatt |
313 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3990111 |
tgaatgggaacaaactcttctgagtttgtgatttgtcgtaaaggagatgaagttattttcttctaatatatgaccaagggtaaattaattaagaagaatt |
3990012 |
T |
|
| Q |
314 |
tttattttaaacaattaagaacgatttatggttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
3990011 |
tttattttaaacaattaagaacgatttatggttattgaatgattttcgtggggtccacatatgtaggtcacacaatactcaacaaaaagtatcaacaatt |
3989912 |
T |
|
| Q |
414 |
accatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagtacaatttttctatcatagnnnnnnnttatccattcccatact |
513 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
3989911 |
accatgtaattaatcttggccaatcaaataaaaaattattaaatcaataattaaaagtacaacttttccatcataggaaaaaactatccattcccatact |
3989812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 517 - 831
Target Start/End: Complemental strand, 3988697 - 3988383
Alignment:
| Q |
517 |
cccaccagtagatccatatccactagctcatactcgaatcttggtagaggtagaccccacattactctaaagaataggacaaagggtaagccaagtgtaa |
616 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988697 |
cccaccggtagatccatatccactagctcatactcgaatcttggtagaggtagaccccacattactctaaagaataggacaaagggtaagccaagtgtaa |
3988598 |
T |
|
| Q |
617 |
attttcatttggacacttgtgaggtgacccgacccactacaacctctgtctgtcccacattcacctagtcttcattcttatccattttagtctcactatt |
716 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988597 |
attttaatttggacacttgtgaggtgacccgacccactacaacctctgtctgtcccacattcacctagtcttcattcttatccattttagtctcactatt |
3988498 |
T |
|
| Q |
717 |
tccactccttggtgtttttaccacattgccactcacaaatatctcgttagttacacttggaagcaggaaaacacttgatccaattttagccgtagatatt |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3988497 |
tccactccttggtgtttttaccacattgccactcacaaatatctcgttagttacacttggaagcaggaaaacacttgatccaattttagccgtagatatt |
3988398 |
T |
|
| Q |
817 |
ttaagcatcactctc |
831 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3988397 |
ttaagcatcactctc |
3988383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 3800866 - 3800618
Alignment:
| Q |
23 |
tgatgtaatttcattaaaaaagagatgtcagtgttgtaaatcacacaattgagaaataggtttcacagatctctgagtcatgttgaagaaggaagagaag |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3800866 |
tgatgtaatttcattaaaaaagagatgtcagtgttgtaaatcacacagttgagaaataagtttcacagatctctgagtcatgttcaagaaggaagagaag |
3800767 |
T |
|
| Q |
123 |
aatgaattaaagaaggaattaaatgggtttcacgcatagttttgtgaatttcatattgaagaatgaagagaa-ggattggaacaatttaggttgaatggg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
3800766 |
aatgaattaaagaaggaattaaatgggtttcatgcatagttttgtgaatttcatattgaagaaggaagagaagggattggaacaattaaggttgaatggg |
3800667 |
T |
|
| Q |
222 |
aacaaactcttgtgagtttgtgatttgtcgtaaaggagatgaagttattttcttctaatata |
283 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800666 |
aacaaaccct-------------attgtcgtaaaggagatgaagttattttcttctaatata |
3800618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 282 - 471
Target Start/End: Complemental strand, 3800345 - 3800158
Alignment:
| Q |
282 |
tatgaccaagggtaaattaattaagaagaatttttattttaaacaattaagaacgatttatggttattgaatgattttcgtggggtccacatatgtgggt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3800345 |
tatgaccaagggtaaattaattaagaagaatttttattttaaacaattaagaacgatttatggttattgaatgattttcatggggtccacatatgtgggt |
3800246 |
T |
|
| Q |
382 |
cacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagt |
471 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
3800245 |
ca--caatactcaacaaaaagtatcaacaattatcaggtaattaatcttggccatccaaataaaaaattattaaatcaatggttaaaagt |
3800158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 4e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 56 - 289
Target Start/End: Original strand, 25066650 - 25066872
Alignment:
| Q |
56 |
ttgtaaatcacacaattgagaaataggtttcacagatctctgagtcatgttgaagaaggaagagaagaatgaattaaagaaggaattaaatgggtttcac |
155 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
25066650 |
ttgtaaatcacacaattgagaaatgggtttcatagatttctgagtcatgttgaagaaggaagagaagaa------------ggaattatattggtttcac |
25066737 |
T |
|
| Q |
156 |
gcatagttttgtgaatttcatattgaagaatgaagagaa-ggattggaacaatttaggttgaatgggaacaaactcttgtgagtttgtgatttgtcgtaa |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |||| ||||||| ||| ||||||||||||| |||||| |
|
|
| T |
25066738 |
gcatagttttgtgaatttcagattgaagaaggaagagaaaggattggaacaatttaggttaaatgacaacaaacccttccgagtttgtgatttctcgtaa |
25066837 |
T |
|
| Q |
255 |
aggagatgaagttattttcttctaatatatgacca |
289 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |
|
|
| T |
25066838 |
aggatatgaaattattttcttctaatatatgacca |
25066872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 341 - 467
Target Start/End: Original strand, 25066915 - 25067038
Alignment:
| Q |
341 |
atggttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaa |
440 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| ||| || |
|
|
| T |
25066915 |
atggttattaaataattttcgtggggtccacatatg--ggtcacacaaaactcaacaaaaagtat-aacaattaccaggtaattaatcttggccatcaaa |
25067011 |
T |
|
| Q |
441 |
ataaaaaattattaaatcaatgtttaa |
467 |
Q |
| |
|
|||||||| ||||||||||||| |||| |
|
|
| T |
25067012 |
ataaaaaactattaaatcaatggttaa |
25067038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 341 - 487
Target Start/End: Complemental strand, 16137404 - 16137260
Alignment:
| Q |
341 |
atggttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaa |
440 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
16137404 |
atggtttttaaatgattttcgtggggtccgaataaa--gatcacacaatgctcaacaaaaagtatcaacaattaccaagtaattaatcttgaccattcaa |
16137307 |
T |
|
| Q |
441 |
ataaaaaattattaaatcaatgtttaaaagtacaatttttctatcat |
487 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| || ||||| ||||| |
|
|
| T |
16137306 |
ataaaaaactattaaatcaatggctaaaagtataacttttccatcat |
16137260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 344 - 448
Target Start/End: Original strand, 54089097 - 54089199
Alignment:
| Q |
344 |
gttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaata |
443 |
Q |
| |
|
|||||| ||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
54089097 |
gttattaaatgattttcgtgggatccacaaatt--ggtcacacaatactcaacaaaaagtatcaacaattaccaggtaattaatcttggctattcaaata |
54089194 |
T |
|
| Q |
444 |
aaaaa |
448 |
Q |
| |
|
||||| |
|
|
| T |
54089195 |
aaaaa |
54089199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 386 - 471
Target Start/End: Complemental strand, 27390359 - 27390274
Alignment:
| Q |
386 |
caatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagt |
471 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
27390359 |
caatactcaataaaaagtatcaacaattaccaggtaattaatcttggcctttcaaataaaaaactattatatcaatggctaaaagt |
27390274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 344 - 519
Target Start/End: Complemental strand, 10255028 - 10254855
Alignment:
| Q |
344 |
gttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaata |
443 |
Q |
| |
|
|||||| ||||||||| ||||||||||| | | |||||| ||||||| ||||||| || |||||||||| || |||||||||||||| ||| |||||| |
|
|
| T |
10255028 |
gttattaaatgatttttgtggggtccacgaa--ttggtcacacaatactaaacaaaaggtctcaacaattatcaggtaattaatcttggccatccaaata |
10254931 |
T |
|
| Q |
444 |
aaaaattattaaatcaatgtttaaaagtacaatttttctatcatagnnnnnnnttatccattcccatactaaaccc |
519 |
Q |
| |
|
||||| ||||| ||| ||| ||||| | ||| ||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
10254930 |
aaaaactattatatcgatggctaaaaatccaaattttccatcatggggaaaaactatccattcccatactaaaccc |
10254855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 471
Target Start/End: Complemental strand, 5486915 - 5486841
Alignment:
| Q |
397 |
aaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagt |
471 |
Q |
| |
|
|||||| ||||||||||| || ||||||||| |||| ||| ||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
5486915 |
aaaaaggatcaacaattatcaggtaattaattttggtcatccaaataaaaaactattatatcaatggctaaaagt |
5486841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 396 - 489
Target Start/End: Original strand, 11677957 - 11678050
Alignment:
| Q |
396 |
caaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagtacaatttttctatcatag |
489 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||| ||| |||||||| || ||||| ||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
11677957 |
caaaaaatatcaacaattactaggtaattaatcttggccatccaaataaagaactattatatcaatggctaaaagtgcaacttttctatcatag |
11678050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 351 - 469
Target Start/End: Complemental strand, 8449282 - 8449167
Alignment:
| Q |
351 |
aatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaatt |
450 |
Q |
| |
|
||||||||| | |||||||||||||| |||| | ||| ||| |||||||||||| ||||||||||| |||||||| |||| ||| |||||||||| | |
|
|
| T |
8449282 |
aatgatttttgcggggtccacatatg--ggtcgcacaaaactgaacaaaaagtat-aacaattaccagataattaattttggtcatccaaataaaaagct |
8449186 |
T |
|
| Q |
451 |
attaaatcaatgtttaaaa |
469 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
8449185 |
attaaatcaatggttaaaa |
8449167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 396 - 487
Target Start/End: Original strand, 32328687 - 32328778
Alignment:
| Q |
396 |
caaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagtacaatttttctatcat |
487 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||| |||||||| || ||||| ||||||| ||||||| ||| ||| ||||||| |
|
|
| T |
32328687 |
caaaaagtatcaacaattatcaagtaattaatcttggccatccaaataaagaactattatatcaatggctaaaagtgcaactttcctatcat |
32328778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 390 - 486
Target Start/End: Original strand, 37785567 - 37785662
Alignment:
| Q |
390 |
actcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataaaaaattattaaatcaatgtttaaaagtacaatttttctatca |
486 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||||| |||||||||||| || ||||| ||||||| |||||||| ||| ||| |||||| |
|
|
| T |
37785567 |
actcaacaaaaagtat-aacaattattaggtaattaatcttgaccattcaaataaacaactattatatcaatggttaaaagtgcaactttcctatca |
37785662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 345 - 449
Target Start/End: Original strand, 24954569 - 24954670
Alignment:
| Q |
345 |
ttattgaatgattttcgtggggtccacatatgtgggtcacgcaatactcaacaaaaagtatcaacaattaccatgtaattaatcttggacattcaaataa |
444 |
Q |
| |
|
||||| ||||||||||||||||| |||| || |||||| ||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
24954569 |
ttattaaatgattttcgtggggttcacaaatt--ggtcacataatactcaacaaaaagtat-aacaattatacggtaattaatcttggtcatccaaataa |
24954665 |
T |
|
| Q |
445 |
aaaat |
449 |
Q |
| |
|
||||| |
|
|
| T |
24954666 |
aaaat |
24954670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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