View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_low_10 (Length: 478)
Name: NF11955_low_10
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 30737882 - 30737447
Alignment:
| Q |
14 |
agatcattttatccaggttattataacaagagaggatcaggctcgaaatgtaaccagagtttccatattggaaggagtagtacctacaaattttgtaggg |
113 |
Q |
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| T |
30737882 |
agatcattttatccaggttattataacaagagaggatcaggctcgaaatgtaaccagagtttccatattggaaggagtagtacctacaaattttgtaggg |
30737783 |
T |
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| Q |
114 |
ttttttattttgaaaaggaaatttttcctttgtattgagtacgtagtaatctcaacaagtttgtgcatttatcaagaaggtatttcttgatgcaaatttg |
213 |
Q |
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| T |
30737782 |
ttttttattttgaagaggaaatttttcctttgtattgagtacgtagtaatctcaacaagtttctgcatttatcaagaaggtatttcttgatgtaaatttg |
30737683 |
T |
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| Q |
214 |
acacacttaaatagagtctttctctatgctgaagtggaggaatctgatatctgagtgaaggatcttcacagacatgacttattatgcttgggtcaaggca |
313 |
Q |
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| T |
30737682 |
acacacttaaatagaggctttctctatgctgaagtggacgagtctgatatatgagtgaaggatcttcacagacatgacttattatgcttgagtcaaggca |
30737583 |
T |
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| Q |
314 |
taatttaacat-gatgtatataaaacatctatgatgcttcttttgtattggaggcttccaatagattttgtgtccttgcttcaatgatgaattcattgca |
412 |
Q |
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| T |
30737582 |
taagttaacatggatgtatataaaacatctatgatacttcttttgtattggaggcttccaatagatttcgtgtccttgcttcaaggatgaattcattcca |
30737483 |
T |
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| Q |
413 |
tagtgtttacatcgagagatgtaagttggctcggatgtatttaa |
456 |
Q |
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| T |
30737482 |
tagtgtttac--------atgtaagttggctcggatgtatttaa |
30737447 |
T |
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