View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_low_13 (Length: 382)
Name: NF11955_low_13
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 26786063 - 26785710
Alignment:
| Q |
14 |
gaaggaggaacacctcacactgttagcttgctattgcatgacaaactggtggatactggaaagccaggtgacagagttgaggtgagactataccatgaga |
113 |
Q |
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| T |
26786063 |
gaaggaggaacacctcacactgttagcttgctattgcatgacaaactggtggatactggaaagccaggtgacagagttgaggtgagactataccatgaga |
26785964 |
T |
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| Q |
114 |
tactctgataaatagatattcttatgtttgttcaatcgtcccatgagtgnnnnnnngtacatcaggtgactggtatatacagggctatgagtgtcagggt |
213 |
Q |
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| T |
26785963 |
tactctgataaatagatattcttatgtttgttcaatcgtcccatgagtgttttgttgtacatcaggtgactggtatatacagggctatgagtgtcagggt |
26785864 |
T |
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| Q |
214 |
gggaccaactcagagaactgttaagtcattgttcaaagtatgggttaccttctcaaactcttttgcatttagagcttctccttttcatttttcatcttgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26785863 |
gggaccaactcagagaactgttaagtcattgttcaaagtatgggttaccttctcaaactcatttgcatttagagcttctccttttcatttttcatcttgt |
26785764 |
T |
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| Q |
314 |
ctaattgacatttgttttgttttgttcatgttgtagacgtatattgattgtctt |
367 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26785763 |
ctaattgacatttgttttcttttgttcatgttgtagacgtatattgattgtctt |
26785710 |
T |
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