View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_low_14 (Length: 337)
Name: NF11955_low_14
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 40395701 - 40396012
Alignment:
| Q |
10 |
atgagatgaagaatatgaaagctataaaccaatccatttctgaattcaattctatttccaatcctaatgtcttagcctcagatataaaacatagttttgt |
109 |
Q |
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| T |
40395701 |
atgacatgaagaatatgaaagctataaaccaatccatttctgaattcaattctatttccaatcctaatgtcttagcctcagatataaaacatagttttgt |
40395800 |
T |
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| Q |
110 |
tcctctaaatcttttggaaactctcccggctttaaccgtagctccgatgtctgatgagcctgcagtatctttagcttcttctacttgcgctacaccgaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395801 |
tcctctaaatcttttggaaactctcccggctttaaccgtagctccgatgtctgatgagcctgcagtatctttagcttcttctacttgcgctacaccgaaa |
40395900 |
T |
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| Q |
210 |
tctccaaacttgactttgtttttgcaggaaccatccctgctatactcatcaacttcaaatatcaaaagtagtgaaatcatgtcaacatcttcaaatccca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395901 |
tctccaaacttgactttgtttttgcaggaaccatccatgctatactcatcaacttcaaatatcaaaagtagtgaaatcatgtcaacatcttcaaatccca |
40396000 |
T |
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| Q |
310 |
catatcctatgt |
321 |
Q |
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|||||||||||| |
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| T |
40396001 |
catatcctatgt |
40396012 |
T |
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