View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_low_2 (Length: 720)
Name: NF11955_low_2
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 271 - 692
Target Start/End: Complemental strand, 25515476 - 25515060
Alignment:
| Q |
271 |
gttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcattcattgaccatcacaataaaagtgttagagtcaacaccatgaa |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25515476 |
gttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcattcattgaccatcacaataaaagtgttagagtcaacaccatgaa |
25515377 |
T |
|
| Q |
371 |
aagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagcctcagnnnnnnncttcttccagacgagagcaaaaccgtcaagagaatattg |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
25515376 |
aagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcccaagcctcagttt-----tttttccagacgagagcaaaaccgtcaagagaatattg |
25515282 |
T |
|
| Q |
471 |
caagtttcaggtctcatcatcgtacacttgcggttcaataaggacttataacactccatagcctccttctctcttctttgtacaaagcaccactgcatat |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25515281 |
caagtttcaggtctcatcatcgtacacttgcggttcaataaggagttataacactccatagcctccttctctcttctttgtacaaagcaccactgcatat |
25515182 |
T |
|
| Q |
571 |
aagtggcactcacaatgctgttgtaataattcggacaccacctcttaaggtcatcaataagctcattagccttatcaaaatttaccactgtcagttgaag |
670 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25515181 |
aagtggcactcacaacgccgttgtaataattcggacaccacctcttaaggtcatcaataagctcattagccttatcaaaatttaccactgtcagttgaag |
25515082 |
T |
|
| Q |
671 |
acaagcagataagagattgtca |
692 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
25515081 |
acaagcagataagagattgtca |
25515060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 25515810 - 25515557
Alignment:
| Q |
1 |
tcagaatcactatgattcatctttgttcttannnnnnncaaagtgtgatccgagtttgaccattcttaatcaagtcatcatacaatccaccttgagacca |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25515810 |
tcagaatcactatgattcatctttgttcttatttttttcaaagtgtgatccgagtttgaccattcttaatcaagtcatcatacaatccaccttgagacca |
25515711 |
T |
|
| Q |
101 |
gcctccaccattttgttaattatcatcaaagcatcatggatcctatccactttaatatatgcagcaaacaaagttgtgtgt--gcgtgcttatccggggt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
25515710 |
gcctccaccattttgttaattatcatcaaagcatcatggatcctatccactttaatatatgcagcaaacaaagttgtgtgtgcgcgcgcttatccggggt |
25515611 |
T |
|
| Q |
199 |
catagacatggagtacatctcttgaaatagattctcagcttcagacaacatatc |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25515610 |
catagacatggagtacatctcttgaaatagattctcagcttcagacaacatatc |
25515557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 257 - 653
Target Start/End: Original strand, 25534958 - 25535346
Alignment:
| Q |
257 |
tagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcattcattgaccatcacaataaaagtgttaga |
356 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||| ||| |
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| T |
25534958 |
tagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaatcttaccaagcttcaagcattcatcgaccatcaaaataaaagtgtcaga |
25535057 |
T |
|
| Q |
357 |
gtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagcctcagnnnnnnncttcttccagacgagagcaaaaccg |
456 |
Q |
| |
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|| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| | || ||||| || |||||||| | |
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| T |
25535058 |
gttgacagcatgaaaagtgggaggtgtatgattgtctaacatgccatgaaacaagtcccaagcctcggttt-----tttttccaaacctgagcaaaatct |
25535152 |
T |
|
| Q |
457 |
tcaagagaatattgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggacttataacactccatagcctccttctctcttctttgtacaaa |
556 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||| |
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| T |
25535153 |
ccaagagcatattgcaagttttaggtctcatca---tacacttgcggttcaataaggagttataacactccatagcctccttatctctttcttgctcaaa |
25535249 |
T |
|
| Q |
557 |
gcaccactgcatataagtggcactcacaatgctgttgtaataattcggacaccacctcttaaggtcatcaataagctcattagccttatcaaaattt |
653 |
Q |
| |
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|||| || ||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |
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| T |
25535250 |
aaaccaatgtatataagtgacactcacatcgccaatgtaataattcggacaccacctcttaagctcatcaataagctcattagctttatcaacattt |
25535346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 253 - 653
Target Start/End: Original strand, 25526922 - 25527314
Alignment:
| Q |
253 |
ggcttagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcattcattgaccatcacaataaaagtgt |
352 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||| | ||||||||| |
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| T |
25526922 |
ggcttagaatcaggtttggttccaactttcttcaaagttgcaagggcttcatcaaccttaccgagcttcaagcattcctcgaccatcaaagtaaaagtgt |
25527021 |
T |
|
| Q |
353 |
tagagtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagcctcagnnnnnnncttc-ttccagacgagagcaa |
451 |
Q |
| |
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|||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| || |||||| |
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| T |
25527022 |
cagagtcgacaccatgaaaagtggaaggcgtgtgattgtctaacatgtcatgaaacaagtcccaagcctcagtt------ttctttccatacttgagcaa |
25527115 |
T |
|
| Q |
452 |
aaccgtcaagagaatattgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggacttataacactccatagcctccttctctcttctttgt |
551 |
Q |
| |
|
|||| |||||||| || || ||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| ||| |
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| T |
25527116 |
aacctccaagagaacatcgccagtttcaggtc---tcatcctacacttgcggttcaataaagacttataacactccatggcgtccttatctcttccttgc |
25527212 |
T |
|
| Q |
552 |
acaaagcaccactgcatataagtggcactcacaatgctgttgtaataattcggacaccacctcttaaggtcatcaataagctcattagccttatcaaaat |
651 |
Q |
| |
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|| |||| | ||| |||||||||||||||| | | || |||| ||||||| ||||||| |||||||||| ||||||||||||||| |||| |
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| T |
25527213 |
ttaagaaaccaattcatgtaagtggcactcacaacaccatggtggtaatatggacaccttatcttaagctcatcaataaactcattagccttatccaaat |
25527312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 25526804 - 25526866
Alignment:
| Q |
190 |
atccggggtcatagacatggagtacatctcttgaaatagattctcagcttcagacaacatatc |
252 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25526804 |
atccggggtcatagacatggagtacatatcttgaaatagattctcagcttcagacaacatatc |
25526866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 25534836 - 25534898
Alignment:
| Q |
190 |
atccggggtcatagacatggagtacatctcttgaaatagattctcagcttcagacaacatatc |
252 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534836 |
atccggagtcatagacatggagtacatctcttgaaatagattctcagcttcagacaacatatc |
25534898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 25534698 - 25534806
Alignment:
| Q |
52 |
gagtttgaccattcttaatcaagtcatcatacaatccaccttgagaccagcctccaccattttgttaattatcatcaaagcatcatggatcctatccact |
151 |
Q |
| |
|
||||| |||||||||||||||||| ||| || | |||||||||||||| |||||| ||| |||||| |||| ||||||||| |||||||| || | |
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| T |
25534698 |
gagttggaccattcttaatcaagtaatcgaaccaaccaccttgagaccaccctccatcatgttgttataagtcatgtaagcatcatcgatcctattcagt |
25534797 |
T |
|
| Q |
152 |
ttaatatat |
160 |
Q |
| |
|
|||| |||| |
|
|
| T |
25534798 |
ttaaaatat |
25534806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 25544412 - 25544459
Alignment:
| Q |
199 |
catagacatggagtacatctcttgaaatagattctcagcttcagacaa |
246 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
25544412 |
catagtcatggagtacatctcttgaaactgattctcagctttagacaa |
25544459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 546
Target Start/End: Original strand, 25538156 - 25538232
Alignment:
| Q |
467 |
attgcaagtttcaggtctcatcatcgtacacttgcggttcaataaggacttataacactccatagcctccttctctcttc |
546 |
Q |
| |
|
|||||||||||||||||||||| | | ||||| ||||||||||||| | |||| ||||||| || ||||| ||||||| |
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|
| T |
25538156 |
attgcaagtttcaggtctcatcct---aaacttgtggttcaataaggagtcataagactccatggcttccttttctcttc |
25538232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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