View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11955_low_3 (Length: 635)
Name: NF11955_low_3
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 573; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 13 - 625
Target Start/End: Original strand, 13102470 - 13103082
Alignment:
| Q |
13 |
tcacattttgtgttccatttgccaatttaaatttgaagaaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13102470 |
tcacattttgtgttccatttgccaatttaaatttgaagaaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagca |
13102569 |
T |
|
| Q |
113 |
cattcgtggtccagcctgcattgaaacatggaaacatacacactataatgtgtcataaaaaagtcttatcaagcaataaaatttgaaggaacataaatgt |
212 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
13102570 |
catacgtggtccagcctgcattgaaacatggaaacttacacactataatgtgtcataaaagagtcttatcaagcattaaaatttgaaggaacataaatgt |
13102669 |
T |
|
| Q |
213 |
acaaattacatggaatgctacgaatttgaatggcgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcattggcgtcttccccc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13102670 |
acaaattacatggaatgctacgaatttgaatggtgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcattggcgtcttccccc |
13102769 |
T |
|
| Q |
313 |
caaatggaagacattcgacccatagcataggccaagtagttcactccgtctcccttttccagtttgtgtccatcaggaagaatatcaggtgcatctgcag |
412 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13102770 |
catatggaagacattcgacccatagcataggccaagtagttcactccgtctcccttttccagtttgtgtccatcaggaagaatatcaggtgcatctgcag |
13102869 |
T |
|
| Q |
413 |
ttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatctagcagagattacaatgacatgaaagaatcaaatcgtaagcac |
512 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13102870 |
ttcttccatccttgaaaaatgatatcataccaatcacacaagaatgtcaacaaaatctagcagagattacaatgacatgaaagaatcaaatcgtaagcac |
13102969 |
T |
|
| Q |
513 |
cctaatataaaaattctgtcaagcaaggaaaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatct |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13102970 |
cctaatataaaaattctgtcaagcaaggaaaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatct |
13103069 |
T |
|
| Q |
613 |
caatgtctctgtg |
625 |
Q |
| |
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||||||||||||| |
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| T |
13103070 |
caatgtctctgtg |
13103082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 471
Target Start/End: Original strand, 13113311 - 13113769
Alignment:
| Q |
13 |
tcacattttgtgttccatttgccaatttaaatttgaagaaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13113311 |
tcacattttgtgttccatttgccaatttaaatttgaagaaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagca |
13113410 |
T |
|
| Q |
113 |
cattcgtggtccagcctgcattgaaacatggaaacatacacactataatgtgtcataaaa-aagtcttatcaagcaataaaatttgaaggaacataaatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | |||| |
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|
| T |
13113411 |
cattcgtggtccagcctgcattgaaacatggaaacttacacactataatatgtcataaaaaaagtcttatcaagcaataaaatttgaaggaaaacaaatt |
13113510 |
T |
|
| Q |
212 |
tacaaattacatggaatgctacgaatttgaatggcgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcattggcgtcttcccc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
13113511 |
tacaaattacatggaatgctacgaatttgaatggcgattcgggttggaaaattccgtctgtaatccatctttcaggacgaaattcatcggcgtcttcccc |
13113610 |
T |
|
| Q |
312 |
ccaaatggaagacattcgacccatagcataggccaagtagttcactccgtctcccttttccagtttgtgtccatcaggaagaatatcaggtgcatctgca |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||| ||||||| ||| || ||||| ||| |
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| T |
13113611 |
ccaaatggaagacattcgacccatagcataggccaagtaatacactccatcgcccttttccagtttgtgtccatcgggaagaacatccggcgcatcagca |
13113710 |
T |
|
| Q |
412 |
gttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatcta |
471 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | || |||||| ||| ||| ||||||||| |
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|
| T |
13113711 |
gttcttccatccttgaaaaatagtatcataac-aagacacaaaaatatcatcaaaatcta |
13113769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 49 - 471
Target Start/End: Complemental strand, 18671277 - 18670853
Alignment:
| Q |
49 |
agaaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgcattgaaacatggaaaca |
148 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18671277 |
agaaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgcattgaaacatggaaact |
18671178 |
T |
|
| Q |
149 |
tacacactataatgtgtcataaaaaa---gtcttatcaagcaataaaatttgaaggaacataaatgtacaaattacatggaatgctacgaatttgaatgg |
245 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
18671177 |
tacacactataatgtgtcataaaaaaaaggtcttatcaagcaataaaatttgaaggaaaacaaatttacaaattacatggaatgctacgaatttgaatgg |
18671078 |
T |
|
| Q |
246 |
cgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcattggcgtcttccccccaaatggaagacattcgacccatagcataggcc |
345 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
18671077 |
tgattcaggctggaaaattccgttgttaatccatctttcaggacaaaattcatcgacgtcttccccccagatggaagacattcgacccatagcataggcc |
18670978 |
T |
|
| Q |
346 |
aagtagttcactccgtctcccttttccagtttgtgtccatcaggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaa |
445 |
Q |
| |
|
||||||| |||||| || |||||||||| |||||||||||| ||||||| ||| || ||||| ||||||||||||||||||||||||| ||||||| | | |
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|
| T |
18670977 |
aagtagtacactccatcgcccttttccactttgtgtccatcgggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataac-a |
18670879 |
T |
|
| Q |
446 |
acacacaataatgtcaacaaaatcta |
471 |
Q |
| |
|
| |||||| ||| ||| ||||||||| |
|
|
| T |
18670878 |
agacacaaaaatatcatcaaaatcta |
18670853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 495
Target Start/End: Original strand, 13095128 - 13095622
Alignment:
| Q |
13 |
tcacattttgtgttccatttgccaatttaaatttgaagaaattaagaagacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13095128 |
tcacattttgtgttccatttgccaatttaaatttgaagaaattaagaacacacattgcaactattttcatttgtctgtatgcaaagtccttccctaagca |
13095227 |
T |
|
| Q |
113 |
cattcgtggtccagcctgcattgaaacatggaaacatacacactataatgtgtcataaaa----------aagtctt-atcaagcaataaaa-tttgaag |
200 |
Q |
| |
|
||| || |||||||||| || |||||| | |||| ||| || ||||| | |||| ||| || |||| ||| || || |||| ||| ||| |
|
|
| T |
13095228 |
catacgaggtccagcctacaaagaaacacgaaaacttacgtaccataatatatcattaaagaacgaaattaattctttatcgagaaagaaaaatttaaag |
13095327 |
T |
|
| Q |
201 |
gaacataaatgtacaaattacatggaatgctacgaatttgaatggcgattcgggctggaaaattccgttgttaatccatctttctggacgaaattcattg |
300 |
Q |
| |
|
||| |||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||| ||||||||||| | | |
|
|
| T |
13095328 |
gaaaataaatgtacaaattacatgaaatgctacaaatttgaatggtgattcgggttggaaaattccgtctgtaatccatctttcaggacgaaattcttcg |
13095427 |
T |
|
| Q |
301 |
gcgtcttccccccaaatggaagacattcgacccatagcataggccaagtagttcactccgtctcccttttccagtttgtgtccatcaggaagaatatcag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
13095428 |
gcgtcttccccccaaatggaagacattcgacccatagcataggccatgtagttcactgcgtctcccttttgcagtttgtggccatcaggaagaatatcag |
13095527 |
T |
|
| Q |
401 |
gtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatctagcagagattacaatgacatgaaag |
495 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13095528 |
gtgcatccgcagttcttccatccttgaaaaatagtatcataccaaagacacaagaatgtcaacaaaatctagcagagattacaatgacatgaaag |
13095622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 542 - 625
Target Start/End: Original strand, 13113973 - 13114056
Alignment:
| Q |
542 |
aaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatctcaatgtctctgtg |
625 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||||| |
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|
| T |
13113973 |
aaaaataattcaagatggttttgaagaaattggtagaaggtacatacaacagggagtacagggtacaatctcaatgtctctgtg |
13114056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 13077072 - 13077132
Alignment:
| Q |
72 |
actattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgca |
132 |
Q |
| |
|
|||||||||||||| || || ||||||||||| |||||||| || ||||| |||||||||| |
|
|
| T |
13077072 |
actattttcatttgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgca |
13077132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 13084076 - 13084136
Alignment:
| Q |
72 |
actattttcatttgtctgtatgcaaagtccttccctaagcacattcgtggtccagcctgca |
132 |
Q |
| |
|
|||||||||||||| || || ||||||||||| |||||||| || ||||| |||||||||| |
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|
| T |
13084076 |
actattttcatttgcctataagcaaagtcctttcctaagcatatacgtggaccagcctgca |
13084136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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