View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_low_4 (Length: 602)
Name: NF11955_low_4
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 253 - 584
Target Start/End: Original strand, 3847005 - 3847336
Alignment:
| Q |
253 |
tcatcaaaaattaatgaacatgcttacgaattgaacaaaagcttgattctgattagtaccaacattacacttagtactcatcacttttccaaacggacta |
352 |
Q |
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| T |
3847005 |
tcatcaaaaatgaatgaacatgcttacgaattgaacaaaagcttgattctgattaacaccaacattacacttagtactcatcacttttccaaacggacta |
3847104 |
T |
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| Q |
353 |
caaagatcagcaagttcttcatcgctgcattcccatggaaggttgcggaagtgaagaaccttggatggaatttgagtgcaacggaattgttgttgctgct |
452 |
Q |
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| T |
3847105 |
caaagatcagcaagttcttcatcgctgcattcccatggaaggttgcggaagtgaagaaccttggatggaatttgagtgcaacggaattgttgttgctgct |
3847204 |
T |
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| Q |
453 |
tggaagatgacattgttgatcgtagctgaatcagttgagannnnnnncagatgaatggaaaaatgagtgagaaaattttattacaagattttcccgagaa |
552 |
Q |
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| T |
3847205 |
tggaagatgacattgttgatcgtagctgaatcagttgagatttttttcagatgaatggaaaaatgagtgagaaaattttattacaagattttcccgagaa |
3847304 |
T |
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| Q |
553 |
agagaaaatgtttgagagtgtgtgtgtttgtt |
584 |
Q |
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| T |
3847305 |
agataaaatgtttgagagtgtgtgtgtttgtt |
3847336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 3846749 - 3846927
Alignment:
| Q |
1 |
caatcacatgcctaggcatcggcatcatgtcagtgtcagactcacaggcatatcacataccggacatgcattcaatctaaagtgttagtgctgcatggcc |
100 |
Q |
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| T |
3846749 |
caatcacatgcctaggcatcggcatcatatcagtgtcagactcacaggcatatcacataccggacatgcattcaatctaaattgtcagtgctgcatggcc |
3846848 |
T |
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| Q |
101 |
agtaaatatgaagcatccatcttcgaattcagctcaattctctctcaaaattcaacaacaacctaaccaatttctaacg |
179 |
Q |
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| T |
3846849 |
agtaaatatgaagtatccatcttcgaattcagctcaattctctctcaaaattcaacaacaacctaaccaatttctaacg |
3846927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 3846682 - 3846748
Alignment:
| Q |
16 |
gcatcggcatcatgtcagtgtcagactcacaggcatatcacataccggacatgcattcaatctaaagt |
83 |
Q |
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| T |
3846682 |
gcatcggcatcgtgt-agtgtcagacacacagacatatcacataccggacatgcattcaatctaaagt |
3846748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 441
Target Start/End: Original strand, 2886933 - 2886994
Alignment:
| Q |
380 |
cattcccatggaaggttgcggaagtgaagaaccttggatggaatttgagtgcaacggaattg |
441 |
Q |
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| T |
2886933 |
cattcccatggaagattgcgaaggtgaagaactttggatggagtttgtgtgtatcggaattg |
2886994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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