View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_low_5 (Length: 556)
Name: NF11955_low_5
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 8766467 - 8766879
Alignment:
| Q |
1 |
aaagtagccctctatgattccggcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctcttacaccaccagctccaatggagatt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8766467 |
aaagtagccctctatgattcctgcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctcttacaccaccagctccaatggagatt |
8766566 |
T |
|
| Q |
101 |
aagcatagagaagagtataagaaagcaagctgtgatgttgtgggagagttgcagctcatagtgataggatcacaaggacttagatttggaatcatagtcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
8766567 |
aagcatagagaagagtataagaaagcaagctgtgatgttgtgggagagttgcagctcatagtgataggatcacaaggacttaggtttggaatcatagttg |
8766666 |
T |
|
| Q |
201 |
ttagccaaaaaagtagcattccctatagtgtgacacataataatataactatataagtaaccaagaagtattggtccaaaataaatatacaacatgaaaa |
300 |
Q |
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| T |
8766667 |
ttagccaaaaaagtagcattccctatagtgagacacataata--------atataagtaaccaagaagtattggtccaaaataaatatacaacatgaaaa |
8766758 |
T |
|
| Q |
301 |
tgttattatagcggatttggattgcactcatagtaacacatttattgatcttggtcattcgatttcaaatcaacggtggtgaagattatttaaagctaat |
400 |
Q |
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|||||||| || |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8766759 |
tgttattacagtggatttggattgaactcatagtaacacgtttattgatcttggtcattcgatttcaaatcaacggtggtgaagattatttaaagctaat |
8766858 |
T |
|
| Q |
401 |
atggtggaagtgcaatctaaa |
421 |
Q |
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| T |
8766859 |
atggtggaagtgcaatctaaa |
8766879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 8748897 - 8749211
Alignment:
| Q |
1 |
aaagtagccctctatgattccggcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctcttacaccaccagctccaatggagatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||| || |||||||||||||||||||||||||||| |||| |
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| T |
8748897 |
aaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaagggtaaggaagaagctcttacaccaccagctccaatggcgatt |
8748996 |
T |
|
| Q |
101 |
aagcatagagaagagtataagaaagcaagctgtgatgttgtgggagagttgcagctcatagtgataggatcacaaggacttagatttggaatcatagtcg |
200 |
Q |
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| T |
8748997 |
aggcatagagaagagtataagaaagcaagttgtgatgttgtcggagagttgcagctcatagtgaattgatcacaaggacttaggtttggaatcatagctg |
8749096 |
T |
|
| Q |
201 |
ttagccaaaaaagtagcattccctatagtgtgacacataataatataactatataagtaaccaagaagtattggtccaaaataaatatacaacatgaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| || ||||| || ||||||||||||||||||||||| |
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| T |
8749097 |
ttagccaaaaaagtagcattccctatagtgtgacgcataata--------atatcagtaaccaaaaaatattgatcaaaaataaatatacaacatgaaaa |
8749188 |
T |
|
| Q |
301 |
tgttattatagcggatttggatt |
323 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
8749189 |
tgttattatagcggatttagatt |
8749211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 8756448 - 8756689
Alignment:
| Q |
1 |
aaagtagccctctatgattccggcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctcttacaccaccagctccaatggagatt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
8756448 |
aaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaaggctaaggaagaggctcttacaccaccagctccaatggagatt |
8756547 |
T |
|
| Q |
101 |
aagcatagagaagagtataagaaagcaagctgtgatgttgtgggagagttgcagctcatagtgataggatcacaaggacttagatttggaatcatagtcg |
200 |
Q |
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| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | | ||||||||||||||||| || ||||| ||| | |
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| T |
8756548 |
aggcatagagaagagtataagaaagcaagttgtgatattgtgggagagttgcagctcatattcaatggatcacaaggacttaggttgggaatggtagctg |
8756647 |
T |
|
| Q |
201 |
ttagccaaaaaagtagcattccctatagtgtgacacataata |
242 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||| |||| |
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| T |
8756648 |
ttagccaaagaagtagcattccctatagcgtgacacaaaata |
8756689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 541
Target Start/End: Original strand, 8766876 - 8766906
Alignment:
| Q |
511 |
taaataaataaagaatactagaaaaaattga |
541 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8766876 |
taaataaataaagaatactagaaaaaattga |
8766906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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