View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11955_low_6 (Length: 521)
Name: NF11955_low_6
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11955_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 6058782 - 6058275
Alignment:
| Q |
1 |
ggaatggttttcaagtgatgattgtacagattctcaaacagaaattgatatactttgcaaattacaaccttaccaagacctgaaattgctatcaataaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6058782 |
ggaatggttttcaagtgatgattgtacagattctcaaacagaaattgatatactttgcaaattacaaccttaccaagacctgaaattgctatcaataaat |
6058683 |
T |
|
| Q |
101 |
ggctataggggtacaagatttccagattggattgggaattcttcgtatcacaatatgactagtctaacaatctcttcttgtgagaattgttgtttgcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6058682 |
ggctataggggtacaagatttccagattggattgggaatccttcgtatcacaatatgactagtctaacaatctcttcttgtgagaattgttgtttgcttc |
6058583 |
T |
|
| Q |
201 |
cttcacttgggcaactaacaactctcaagtacctcactatttcagatttgaatgggctagagactatagatgatagtttctacaaaaacggagattcttc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6058582 |
cttcacttgggcaactaacaactctcaagtacctcactatttcagatttgaatgggctagagactatagatggtagtttctacaaaaacggagattcttc |
6058483 |
T |
|
| Q |
301 |
ttcttcggtaacaccatttcctttgcttgaatttcttgaatttgaaaacatgccttgttggaaggtgtggcattcatctgagtcatgtgcttttcctcaa |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6058482 |
ttcttccgtaacaccatttcctttgcttgaatttcttgaatttgaaaacatgccttgttggaaggtgtggcattcatctgagtcatatgcttttcctcaa |
6058383 |
T |
|
| Q |
401 |
cttaagcgtctcacaatagaaaattgtccaaaattaagaggagatttaccacttcacctcccttcattgaaaacacttgcaattagaagttgtgagcatc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6058382 |
cttaagcgtctcacaatagaaaattgtccaaaattaagaggagatttaccagttcacctcccttcattgaaaacacttgcaattagaagttgtgagcatc |
6058283 |
T |
|
| Q |
501 |
ttgtctct |
508 |
Q |
| |
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|||||||| |
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| T |
6058282 |
ttgtctct |
6058275 |
T |
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