View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11955_low_7 (Length: 514)

Name: NF11955_low_7
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11955_low_7
NF11955_low_7
[»] chr6 (4 HSPs)
chr6 (1-503)||(3846222-3846737)
chr6 (1-41)||(3846780-3846820)
chr6 (204-278)||(20703431-20703506)
chr6 (193-279)||(2271153-2271239)
[»] chr5 (12 HSPs)
chr5 (193-277)||(16829229-16829313)
chr5 (197-274)||(35463984-35464061)
chr5 (197-278)||(11417418-11417500)
chr5 (197-242)||(30908911-30908956)
chr5 (246-279)||(35463979-35464012)
chr5 (228-267)||(39063136-39063175)
chr5 (424-466)||(18542227-18542269)
chr5 (205-274)||(8850303-8850372)
chr5 (205-274)||(12645388-12645457)
chr5 (205-274)||(27895936-27896005)
chr5 (246-279)||(28499808-28499841)
chr5 (194-242)||(28351008-28351056)
[»] chr1 (17 HSPs)
chr1 (193-273)||(29853196-29853276)
chr1 (197-271)||(1442067-1442141)
chr1 (218-274)||(15497534-15497588)
chr1 (230-277)||(44661795-44661842)
chr1 (193-274)||(10325316-10325396)
chr1 (193-266)||(27634299-27634371)
chr1 (221-274)||(47154705-47154758)
chr1 (222-274)||(11016646-11016698)
chr1 (236-279)||(47084635-47084678)
chr1 (246-280)||(882951-882985)
chr1 (205-274)||(457612-457681)
chr1 (246-279)||(1226741-1226774)
chr1 (195-276)||(4540650-4540731)
chr1 (205-274)||(30412628-30412697)
chr1 (205-274)||(47911881-47911950)
chr1 (212-276)||(1442079-1442143)
chr1 (245-273)||(5091750-5091778)
[»] chr7 (15 HSPs)
chr7 (194-274)||(29229701-29229781)
chr7 (205-274)||(12423685-12423754)
chr7 (194-266)||(39751093-39751165)
chr7 (204-278)||(34427545-34427619)
chr7 (219-275)||(24283094-24283150)
chr7 (232-274)||(35985291-35985333)
chr7 (232-274)||(36006699-36006741)
chr7 (219-279)||(25778359-25778419)
chr7 (236-277)||(15996144-15996185)
chr7 (205-274)||(35274452-35274521)
chr7 (218-271)||(42927019-42927072)
chr7 (243-275)||(30322794-30322826)
chr7 (246-278)||(31903035-31903067)
chr7 (194-274)||(35985288-35985368)
chr7 (194-274)||(36006696-36006776)
[»] chr4 (7 HSPs)
chr4 (195-274)||(7277448-7277527)
chr4 (193-277)||(10304684-10304768)
chr4 (220-274)||(24099596-24099650)
chr4 (424-469)||(20742367-20742412)
chr4 (425-466)||(43061690-43061731)
chr4 (205-278)||(48601135-48601208)
chr4 (194-274)||(7277445-7277525)
[»] chr2 (12 HSPs)
chr2 (232-274)||(644097-644139)
chr2 (217-276)||(1220808-1220867)
chr2 (215-266)||(32965699-32965750)
chr2 (206-279)||(11030431-11030504)
chr2 (199-274)||(30429100-30429175)
chr2 (246-279)||(27279513-27279546)
chr2 (197-266)||(41221669-41221738)
chr2 (246-277)||(9733547-9733578)
chr2 (193-277)||(472439-472524)
chr2 (246-279)||(7645541-7645574)
chr2 (246-279)||(41221710-41221743)
chr2 (246-278)||(25997344-25997376)
[»] chr3 (11 HSPs)
chr3 (205-277)||(11534795-11534867)
chr3 (212-279)||(25108954-25109020)
chr3 (207-273)||(41288138-41288204)
chr3 (425-460)||(15802352-15802387)
chr3 (205-275)||(45799938-45800008)
chr3 (246-277)||(55121202-55121233)
chr3 (205-266)||(11534795-11534856)
chr3 (228-277)||(26331246-26331295)
chr3 (422-466)||(26073227-26073271)
chr3 (195-274)||(32711237-32711317)
chr3 (195-274)||(42896175-42896255)
[»] chr8 (6 HSPs)
chr8 (218-278)||(14578530-14578590)
chr8 (194-274)||(18147839-18147920)
chr8 (425-460)||(11556961-11556996)
chr8 (194-257)||(37990336-37990399)
chr8 (424-490)||(23559640-23559706)
chr8 (246-274)||(18147842-18147870)
[»] scaffold0001 (1 HSPs)
scaffold0001 (425-466)||(398638-398679)
[»] scaffold0003 (1 HSPs)
scaffold0003 (194-277)||(320699-320783)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 3846737 - 3846222
Alignment:
Q  1 aatgcatgtccggtatgtgatatgtctgtgtgtctgacactacacgatgccgatgctgatgcatgtggttacattcaatcacattttcctttaattatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3846737 aatgcatgtccggtatgtgatatgtctgtgtgtctgacactacacgatgccgatgctgatgcatgtggttacattcaatcacattttcctttaattatta 3846638  T
Q  101 ctaat--atatgtgtcattgtctctgtcgtgttcaatgtccgcgaatgtgccaatgcttcatactctatatggtcacatttataagcnnnnnnntaactt 198  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||||       ||||||    
T  3846637 ctaatatatatgtgtcattgtctctgtcgtgttcaatgtccgcgaatgtgtcaatgcttcatactctctctggtcgcatttataagcaaaaaaataactt 3846538  T
Q  199 tttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaa-----------ttataaatgtga 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||           ||||||||||||    
T  3846537 tttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattatttattcaatgaacttaaaaaattattttttgcttataaatgtga 3846438  T
Q  288 ccggaggaagtagtttgttcgatgctcgtgtatgtgtcaatgcttcatagcctggatgttgtattgacactttagattgaaaactggtgtccgacacatg 387  Q
    ||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3846437 ccgaagggagtagtttgttcgatgttcatgtatgtgtcaatgcttcatagcctggatgttgtattgacactttagattgaaaactggtgtctgacacatg 3846338  T
Q  388 ttggtgcatacccctgacaaggcactgatgcatttaattacattcaattacttaaattttctcaaattattacttgtgtttatgtgttatagtaaatgtc 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3846337 ttggtgcatacccctgacaaggcactgatgcatttaattacattcaattacttaaattttctcaaattattacttgtgtttatgtgtcatagtaaatgtc 3846238  T
Q  488 gtggttgatgtctgtg 503  Q
    ||| ||||||| ||||    
T  3846237 gtgtttgatgtttgtg 3846222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3846820 - 3846780
Alignment:
Q  1 aatgcatgtccggtatgtgatatgtctgtgtgtctgacact 41  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  3846820 aatgcatgtccggtatgtgatatgcctgtgagtctgacact 3846780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 20703506 - 20703431
Alignment:
Q  204 gttcatttaatatctaatgtatccggtctatat-ataggtcatatacattagttattcaatgaacctaaaaaatta 278  Q
    ||||||| ||||| ||||||||  ||||||||| ||||  || ||||||||  |||||||||||||||||||||||    
T  20703506 gttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaaaatta 20703431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 2271153 - 2271239
Alignment:
Q  193 taactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaattat 279  Q
    |||||||| ||||| ||| ||||  |||| |||  |||| ||||||| |||| ||||||||||| ||||||||| ||||||| ||||    
T  2271153 taacttttaaagtttattgaataagtaatctattgggtcaatatatatgtcaaatacattagttgttcaatgaatctaaaaagttat 2271239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 16829229 - 16829313
Alignment:
Q  193 taactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaatt 277  Q
    |||||||||||||||||| |||||||||||||||  || |||||| |||||| ||||||||||||||| ||||||||||||||||    
T  16829229 taactttttaagttcattgaatatctaatgtatctagtttatataaaggtcagatacattagttattcgatgaacctaaaaaatt 16829313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 35463984 - 35464061
Alignment:
Q  197 tttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||| ||||||| |||| ||||||||||||||||||||||| || | ||||||||| || |||| |||||||||||    
T  35463984 tttttaggttcattgaataactaatgtatccggtctatatatatgttagatacattagctactcaaagaacctaaaaa 35464061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 11417418 - 11417500
Alignment:
Q  197 tttttaagttcatttaatatctaatgtatccggtc-tatatataggtcatatacattagttattcaatgaacctaaaaaatta 278  Q
    |||||||||||||| ||||  || || ||| |||| ||| |||||  ||||||||||||| ||||||||||||||||||||||    
T  11417418 tttttaagttcattgaataattattgaatctggtcatatttatagaccatatacattagtcattcaatgaacctaaaaaatta 11417500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 30908911 - 30908956
Alignment:
Q  197 tttttaagttcatttaatatctaatgtatccggtctatatataggt 242  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||    
T  30908911 tttttaagttcatttaataaataatgtattcggtctatatataggt 30908956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 35464012 - 35463979
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaattat 279  Q
    ||||||||||||||||||||||||||||||||||    
T  35464012 atacattagttattcaatgaacctaaaaaattat 35463979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 39063175 - 39063136
Alignment:
Q  228 ggtctatatataggtcatatacattagttattcaatgaac 267  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  39063175 ggtctatatataggtcacatacattagttatacaatgaac 39063136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 466
Target Start/End: Original strand, 18542227 - 18542269
Alignment:
Q  424 attacattcaattacttaaattttctcaaattattacttgtgt 466  Q
    |||||||||||||||||  ||||||||||||||||||| ||||    
T  18542227 attacattcaattacttgtattttctcaaattattactggtgt 18542269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 8850303 - 8850372
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||| ||||| ||||||||  |||| ||||||||  || ||||||||  |||||||||||||||||||    
T  8850303 ttcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 8850372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 12645388 - 12645457
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||| ||||| |||||||| |||| |||||||||  || ||||||||  |||||||||||| ||||||    
T  12645388 ttcattcaatatttaatgtattcggtttatatatagaccaaatacattatgtattcaatgaacttaaaaa 12645457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 27895936 - 27896005
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||||  | ||||||   |||||||||||||||| |||||| | ||||| ||||||||||||||    
T  27895936 ttcatttaataaatgatgtatgtagtctatatataggtcacatacatcatttattaaatgaacctaaaaa 27896005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 28499841 - 28499808
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaattat 279  Q
    ||||||||||||||||||||| ||||||||||||    
T  28499841 atacattagttattcaatgaatctaaaaaattat 28499808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 28351056 - 28351008
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtctatatataggt 242  Q
    |||||||||  |||||| |||| |||||||||||||||||| |||||||    
T  28351056 aactttttagattcattgaataactaatgtatccggtctatttataggt 28351008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 193 - 273
Target Start/End: Complemental strand, 29853276 - 29853196
Alignment:
Q  193 taactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaa 273  Q
    |||||||||| ||||||||||||  |||||||| || |||||||||| |||| |||||||||||||| |||||||||||||    
T  29853276 taactttttatgttcatttaataaataatgtattcgatctatatataagtcagatacattagttattgaatgaacctaaaa 29853196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 1442141 - 1442067
Alignment:
Q  197 tttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaa 271  Q
    |||||||||||||| ||||  |||| ||||||  |||||||||| ||| |||||||||||||||||| |||||||    
T  1442141 tttttaagttcattaaataattaatatatccgacctatatatagatcagatacattagttattcaataaacctaa 1442067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 15497534 - 15497588
Alignment:
Q  218 taatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||  |||||||    
T  15497534 taatgtatccggtctatatat--gtcatatacattagttattcaatgagtctaaaaa 15497588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 44661842 - 44661795
Alignment:
Q  230 tctatatataggtcatatacattagttattcaatgaacctaaaaaatt 277  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||||    
T  44661842 tctatatataggtaagatacattagttattcaatgaacttaaaaaatt 44661795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 10325396 - 10325316
Alignment:
Q  193 taactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    ||||||||||  |||||| |||| |||||||||| ||| || ||||||  || |||||| ||||||||||||||||||||||    
T  10325396 taactttttatattcattaaataactaatgtatctggtgta-atatagagcaaatacataagttattcaatgaacctaaaaa 10325316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 27634299 - 27634371
Alignment:
Q  193 taactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaa 266  Q
    |||||||||| ||| ||| ||||||||||||| |||||| ||||||  |||| ||| |||||||||||||||||    
T  27634299 taactttttaggttaattgaatatctaatgta-ccggtcaatatattagtcaaatagattagttattcaatgaa 27634371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 47154705 - 47154758
Alignment:
Q  221 tgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    ||||||| ||||||||||||| || |||||||| ||||| ||||||||||||||    
T  47154705 tgtatccagtctatatataggccagatacattatttattaaatgaacctaaaaa 47154758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 11016646 - 11016698
Alignment:
Q  222 gtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    ||||| ||||||||||  | |||||||||||||||||||||| ||||||||||    
T  11016646 gtatctggtctatataatgatcatatacattagttattcaataaacctaaaaa 11016698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 47084635 - 47084678
Alignment:
Q  236 tataggtcatatacattagttattcaatgaacctaaaaaattat 279  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||    
T  47084635 tatagatcaaatacattagttattctatgaacctaaaaaattat 47084678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 882985 - 882951
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaattata 280  Q
    ||||||||||||||||||||||||||||| |||||    
T  882985 atacattagttattcaatgaacctaaaaagttata 882951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 457612 - 457681
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||| ||||| ||||||||  |||| ||||||||  || ||||||||  |||||||||||||||||||    
T  457612 ttcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 457681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 1226741 - 1226774
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaattat 279  Q
    |||||||||||||||||||||| |||||||||||    
T  1226741 atacattagttattcaatgaacttaaaaaattat 1226774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 4540650 - 4540731
Alignment:
Q  195 actttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaat 276  Q
    ||||| || ||||||| ||||| |||||||| |||||||||||| |  || ||||||||  |||| |||||| |||||||||    
T  4540650 actttataggttcattgaatatataatgtattcggtctatatattgaccaaatacattaagtattgaatgaatctaaaaaat 4540731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 30412697 - 30412628
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||| ||||| ||||||||  |||| ||||||||  || ||||||||  |||||||||||||||||||    
T  30412697 ttcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 30412628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 47911950 - 47911881
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||| ||||| ||||||||  |||| ||||||||  || ||||||||  |||||||||||||||||||    
T  47911950 ttcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 47911881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 1442079 - 1442143
Alignment:
Q  212 aatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaat 276  Q
    |||| |||||||||| | ||||||||||||||  ||| |||| ||||| ||||||| ||||||||    
T  1442079 aataactaatgtatctgatctatatataggtcggatatattaattatttaatgaacttaaaaaat 1442143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 273
Target Start/End: Original strand, 5091750 - 5091778
Alignment:
Q  245 tatacattagttattcaatgaacctaaaa 273  Q
    |||||||||||||||||||||||||||||    
T  5091750 tatacattagttattcaatgaacctaaaa 5091778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 29229701 - 29229781
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||  |||||| || | |||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  29229701 aactttttagattcattaaacaactaatgcatttggtctatatataggtcagatacattagttattcaatgaacctaaaaa 29229781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 12423685 - 12423754
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||| ||||||||| ||||  ||||||||||||||||| ||||||||  |||||||||||||||||||    
T  12423685 ttcattcaatatctaacgtatttggtctatatataggtcaaatacattatgtattcaatgaacctaaaaa 12423754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 39751093 - 39751165
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaa 266  Q
    |||||||||  |||||| ||||||||||||||  ||||||||||| ||| | |||||||||||||||||||||    
T  39751093 aactttttagattcattaaatatctaatgtatatggtctatatattggtaaaatacattagttattcaatgaa 39751165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 34427545 - 34427619
Alignment:
Q  204 gttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaatta 278  Q
    ||||||| ||||  |||||||| | |||||||||||||||| ||| |||||||||| ||||||| ||||||||||    
T  34427545 gttcattcaataaataatgtattcagtctatatataggtcagatatattagttattgaatgaacttaaaaaatta 34427619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 24283150 - 24283094
Alignment:
Q  219 aatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaa 275  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||||  |||||||    
T  24283150 aatgtatccggtttatatatatgtcagatacattagttattcaatgaatttaaaaaa 24283094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 35985333 - 35985291
Alignment:
Q  232 tatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  35985333 tatatataggtcatatacattagttattcaattaatctaaaaa 35985291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 36006741 - 36006699
Alignment:
Q  232 tatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  36006741 tatatataggtcatatacattagttattcaattaatctaaaaa 36006699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 25778359 - 25778419
Alignment:
Q  219 aatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaattat 279  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||| || | ||||||||||    
T  25778359 aatgtatcgtgtctatatataggtcagatacattagttgttcaataaatcgaaaaaattat 25778419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 15996185 - 15996144
Alignment:
Q  236 tataggtcatatacattagttattcaatgaacctaaaaaatt 277  Q
    ||||||||| |||||||| |||||||||| ||||||||||||    
T  15996185 tataggtcagatacattaattattcaatgtacctaaaaaatt 15996144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 35274452 - 35274521
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||| ||||| ||||||||  |||| ||||||||  || ||||||||  |||||||||||||||||||    
T  35274452 ttcattcaatatttaatgtatttggtcaatatatagaccaaatacattatgtattcaatgaacctaaaaa 35274521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 42927072 - 42927019
Alignment:
Q  218 taatgtatccggtctatatataggtcatatacattagttattcaatgaacctaa 271  Q
    |||||||| || | ||||||||| ||| ||||||||||||||||||||| ||||    
T  42927072 taatgtattcgatttatatatagatcaaatacattagttattcaatgaatctaa 42927019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 30322794 - 30322826
Alignment:
Q  243 catatacattagttattcaatgaacctaaaaaa 275  Q
    ||||||||||| |||||||||||||||||||||    
T  30322794 catatacattaattattcaatgaacctaaaaaa 30322826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 31903035 - 31903067
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaatta 278  Q
    |||||||| ||||||||||||||||||||||||    
T  31903035 atacattaattattcaatgaacctaaaaaatta 31903067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 35985288 - 35985368
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||  || ||| |||| |||||||||  |  ||||||||| |||| |||||||||||||||||| || |||||||    
T  35985288 aactttttagattaattgaataactaatgtatatgacctatatataagtcaaatacattagttattcaattaatctaaaaa 35985368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 36006696 - 36006776
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||  || ||| |||| |||||||||  |  ||||||||| |||| |||||||||||||||||| || |||||||    
T  36006696 aactttttagattaattgaataactaatgtatatgacctatatataagtcaaatacattagttattcaattaatctaaaaa 36006776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 7277527 - 7277448
Alignment:
Q  195 actttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||||| ||| |||| || ||||||| | |||||||| | |||| |||||||||||||||||||||||||||||    
T  7277527 actttttaagtttattgaataactcatgtatctgatctatataaaagtcagatacattagttattcaatgaacctaaaaa 7277448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 10304684 - 10304768
Alignment:
Q  193 taactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaatt 277  Q
    |||||||| | ||||||| |||| | |||| | ||||||||||||| |||||||||||||||||||| ||||||  |||||||||    
T  10304684 taacttttcatgttcattaaataaccaatgaagccggtctatatatcggtcatatacattagttatttaatgaatttaaaaaatt 10304768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 24099596 - 24099650
Alignment:
Q  220 atgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    ||||||| ||||||||||||||||| ||| |||| |||||| |||||||||||||    
T  24099596 atgtatcaggtctatatataggtcaaatatattatttattcgatgaacctaaaaa 24099650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 20742412 - 20742367
Alignment:
Q  424 attacattcaattacttaaattttctcaaattattacttgtgttta 469  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||    
T  20742412 attacattcaattacttgcattttctcaaattattactggtgttta 20742367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 466
Target Start/End: Original strand, 43061690 - 43061731
Alignment:
Q  425 ttacattcaattacttaaattttctcaaattattacttgtgt 466  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||    
T  43061690 ttacattcaattatttatattttctcaaattattactagtgt 43061731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 48601208 - 48601135
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaatta 278  Q
    |||||| |||| ||||| ||| || | || |||||||||| |||||||||||||||||| ||  ||||||||||    
T  48601208 ttcattgaataactaatttattcgatttacatataggtcagatacattagttattcaataaatataaaaaatta 48601135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 7277445 - 7277525
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    ||||||||| ||||||| |||| |||||||||| |   | ||||||| ||| |||||| ||||||||||| ||| ||||||    
T  7277445 aactttttaggttcattgaataactaatgtatctgacttttatatagatcagatacatgagttattcaataaacttaaaaa 7277525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 644097 - 644139
Alignment:
Q  232 tatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  644097 tatatataggtcatatacattagttattcaatgaacctaaaaa 644139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 276
Target Start/End: Complemental strand, 1220867 - 1220808
Alignment:
Q  217 ctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaat 276  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  1220867 ctaatttattcggtctatatataggtcaaatacattagttattcaatgaatctacaaaat 1220808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 32965699 - 32965750
Alignment:
Q  215 atctaatgtatccggtctatatataggtcatatacattagttattcaatgaa 266  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||||||||    
T  32965699 atctattgtatccggtctatatataggccaaatacattagttattcaatgaa 32965750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 11030504 - 11030431
Alignment:
Q  206 tcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaattat 279  Q
    ||||| ||||| ||||||||||| |||||||||   ||| |||||||||| ||||||||||||||||| |||||    
T  11030504 tcattgaatatttaatgtatccgatctatatatttatcaaatacattagtcattcaatgaacctaaaatattat 11030431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 30429175 - 30429100
Alignment:
Q  199 tttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    |||| ||| ||| |||| ||||||||||  ||||||||| |||||| |||||||| ||||| ||||||||||||||    
T  30429175 tttaggtttattgaataactaatgtatctagtctatataaaggtcagatacattaattattgaatgaacctaaaaa 30429100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 27279546 - 27279513
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaattat 279  Q
    ||||||||||||||||||||||||||||||||||    
T  27279546 atacattagttattcaatgaacctaaaaaattat 27279513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 41221738 - 41221669
Alignment:
Q  197 tttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaa 266  Q
    |||||| ||||||| |||| ||||||||||||||||||||  | |||| |||||||| ||||| ||||||    
T  41221738 tttttaggttcattgaataactaatgtatccggtctatatgaaagtcagatacattaattattaaatgaa 41221669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 9733547 - 9733578
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaatt 277  Q
    ||||||||||||||||||||||||||||||||    
T  9733547 atacattagttattcaatgaacctaaaaaatt 9733578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 472439 - 472524
Alignment:
Q  193 taactttttaagttcatttaatatctaatgtatccggtc-tatatataggtcatatacattagttattcaatgaacctaaaaaatt 277  Q
    |||||||||| ||| ||| |||| |||||||||  |||| ||| |||||  || ||| |||||||||||||| |||||||||||||    
T  472439 taactttttaggtttattgaataactaatgtatttggtcatatttatagaccaaatatattagttattcaattaacctaaaaaatt 472524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 7645541 - 7645574
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaattat 279  Q
    |||||||||||||| |||||||||||||||||||    
T  7645541 atacattagttatttaatgaacctaaaaaattat 7645574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 41221710 - 41221743
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaattat 279  Q
    ||||||||||||||||||||||||||||| ||||    
T  41221710 atacattagttattcaatgaacctaaaaatttat 41221743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 25997376 - 25997344
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaatta 278  Q
    |||||||||||||||||||||| ||||||||||    
T  25997376 atacattagttattcaatgaacataaaaaatta 25997344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 11534795 - 11534867
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaatt 277  Q
    |||||| |||| |||||||||  ||||||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  11534795 ttcattgaatacctaatgtatatggtctatatataggtcagatacattaaatattcaatgaatctaaaaaatt 11534867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 25108954 - 25109020
Alignment:
Q  212 aatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaattat 279  Q
    |||| ||||||||| |||| |||||| ||| ||||||||||||||||||||||||| |||||||||||    
T  25108954 aataactaatgtatacggtatatataaagg-catatacattagttattcaatgaacataaaaaattat 25109020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 41288138 - 41288204
Alignment:
Q  207 catttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaa 273  Q
    |||||||||||||||||||  |||||||||||| |||| ||||||||| || |||| ||||||||||    
T  41288138 catttaatatctaatgtatttggtctatatataagtcaaatacattaggtaatcaacgaacctaaaa 41288204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 460
Target Start/End: Complemental strand, 15802387 - 15802352
Alignment:
Q  425 ttacattcaattacttaaattttctcaaattattac 460  Q
    ||||||||||||||||||||||||||||||||||||    
T  15802387 ttacattcaattacttaaattttctcaaattattac 15802352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 45799938 - 45800008
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaa 275  Q
    ||||||| |||||||||||||  |||||| |||||| ||| ||||||||  ||||||||||| ||||||||    
T  45799938 ttcattttatatctaatgtatttggtctacatatagatcaaatacattatgtattcaatgaatctaaaaaa 45800008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 277
Target Start/End: Complemental strand, 55121233 - 55121202
Alignment:
Q  246 atacattagttattcaatgaacctaaaaaatt 277  Q
    ||||||||||||||||||||||||||||||||    
T  55121233 atacattagttattcaatgaacctaaaaaatt 55121202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 11534856 - 11534795
Alignment:
Q  205 ttcatttaatatctaatgtatccggtctatatataggtcatatacattagttattcaatgaa 266  Q
    |||||| ||||| ||||||||| |  ||||||||||  |||||||||||| |||||||||||    
T  11534856 ttcattgaatatttaatgtatctgacctatatatagaccatatacattaggtattcaatgaa 11534795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 26331295 - 26331246
Alignment:
Q  228 ggtctatatataggtcatatacattagttattcaatgaacctaaaaaatt 277  Q
    |||||||||||||  || |||||||||| |||||||||||||| ||||||    
T  26331295 ggtctatatatagaccagatacattagtcattcaatgaacctagaaaatt 26331246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 26073271 - 26073227
Alignment:
Q  422 taattacattcaattacttaaattttctcaaattattacttgtgt 466  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||    
T  26073271 taattacattcaattacttctactttcttaaattattacttgtgt 26073227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 32711317 - 32711237
Alignment:
Q  195 actttttaagttcatttaatatctaatgtatccggtctata-tataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    ||||||||  |||||| ||||  | ||||||| |||||||| |||||| || |||||| | ||||||||||||||||||||    
T  32711317 actttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaacctaaaaa 32711237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 42896175 - 42896255
Alignment:
Q  195 actttttaagttcatttaatatctaatgtatccggtctatatataggtc-atatacattagttattcaatgaacctaaaaa 274  Q
    |||||||| ||||||| |||| || ||||||| ||||||||   ||| | |||||||| ||||||||||||||| ||||||    
T  42896175 actttttaggttcattgaataactgatgtatctggtctataataaggaccatatacatcagttattcaatgaacgtaaaaa 42896255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 14578590 - 14578530
Alignment:
Q  218 taatgtatccggtctatatataggtcatatacattagttattcaatgaacctaaaaaatta 278  Q
    |||| |||| ||||||||||||| ||| |||||||| ||||||||||||||||||| ||||    
T  14578590 taatatatcgggtctatatatagatcagatacattaattattcaatgaacctaaaatatta 14578530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 18147839 - 18147920
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtc-tatatataggtcatatacattagttattcaatgaacctaaaaa 274  Q
    ||||||||| ||||||| |||| ||||||||||| ||| ||  ||||||||| |||||| |||||||||||  |||||||||    
T  18147839 aactttttaggttcattgaataactaatgtatccagtcataattataggtcagatacatgagttattcaatatacctaaaaa 18147920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 460
Target Start/End: Original strand, 11556961 - 11556996
Alignment:
Q  425 ttacattcaattacttaaattttctcaaattattac 460  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11556961 ttacattcaatcacttaaattttctcaaattattac 11556996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 37990399 - 37990336
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtctatatataggtcatatacattagtta 257  Q
    |||||||||| |||||| |||||||||| ||| |  |||||||||| |||| ||||||||||||    
T  37990399 aactttttaaattcattaaatatctaatatattctatctatatataagtcaaatacattagtta 37990336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 23559706 - 23559640
Alignment:
Q  424 attacattcaattacttaaattttctcaaattattacttgtgtttatgtgttatagtaaatgtcgtg 490  Q
    |||||||||||| |||| |||||| | |||||||||||  ||| ||||||||||||| | |||||||    
T  23559706 attacattcaatcacttcaattttttgaaattattactgatgtctatgtgttatagtcactgtcgtg 23559640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 18147870 - 18147842
Alignment:
Q  246 atacattagttattcaatgaacctaaaaa 274  Q
    |||||||||||||||||||||||||||||    
T  18147870 atacattagttattcaatgaacctaaaaa 18147842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 466
Target Start/End: Complemental strand, 398679 - 398638
Alignment:
Q  425 ttacattcaattacttaaattttctcaaattattacttgtgt 466  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  398679 ttacattcaattacttcaattttcttaaattattatttgtgt 398638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 277
Target Start/End: Complemental strand, 320783 - 320699
Alignment:
Q  194 aactttttaagttcatttaatatctaatgtatccggtctatatatagg-tcatatacattagttattcaatgaacctaaaaaatt 277  Q
    |||||||||  |||||| |||| ||||| |||| ||| |||| ||||| | | |||||||||||||||||  |||||||||||||    
T  320783 aactttttagattcattaaataactaatatatctggtttataaataggattagatacattagttattcaacaaacctaaaaaatt 320699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University