View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11955_low_9 (Length: 479)

Name: NF11955_low_9
Description: NF11955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11955_low_9
NF11955_low_9
[»] chr2 (8 HSPs)
chr2 (60-262)||(39247280-39247482)
chr2 (337-467)||(39247075-39247205)
chr2 (18-112)||(10749567-10749657)
chr2 (18-110)||(36180596-36180684)
chr2 (18-111)||(28244246-28244335)
chr2 (18-111)||(36816305-36816394)
chr2 (18-111)||(3933053-3933142)
chr2 (9-42)||(36376805-36376838)
[»] chr3 (5 HSPs)
chr3 (18-112)||(43333558-43333648)
chr3 (18-107)||(41717543-41717628)
chr3 (26-111)||(46092848-46092929)
chr3 (15-43)||(18169247-18169275)
chr3 (15-43)||(32931871-32931899)
[»] chr7 (7 HSPs)
chr7 (18-111)||(42663177-42663266)
chr7 (18-110)||(34992225-34992313)
chr7 (20-111)||(33223418-33223505)
chr7 (18-111)||(37351879-37351968)
chr7 (45-110)||(38096329-38096394)
chr7 (1-43)||(28548188-28548230)
chr7 (15-43)||(35005052-35005080)
[»] chr1 (9 HSPs)
chr1 (55-114)||(9445231-9445290)
chr1 (18-113)||(27091455-27091546)
chr1 (18-111)||(17390730-17390819)
chr1 (62-109)||(51866192-51866239)
chr1 (18-113)||(6841884-6841975)
chr1 (21-103)||(23226310-23226388)
chr1 (53-111)||(7648373-7648432)
chr1 (21-89)||(47117824-47117888)
chr1 (15-43)||(5959478-5959506)
[»] chr8 (8 HSPs)
chr8 (18-105)||(39021338-39021421)
chr8 (18-113)||(44086399-44086490)
chr8 (9-43)||(28623078-28623112)
chr8 (45-110)||(2520021-2520086)
chr8 (26-108)||(6162049-6162127)
chr8 (1-43)||(14228769-14228811)
chr8 (9-43)||(41519942-41519976)
chr8 (15-43)||(7596844-7596872)
[»] chr5 (7 HSPs)
chr5 (18-112)||(36572784-36572874)
chr5 (45-111)||(6538986-6539049)
chr5 (18-111)||(8897475-8897564)
chr5 (18-107)||(23991027-23991112)
chr5 (20-113)||(35233343-35233432)
chr5 (1-109)||(32053813-32053918)
chr5 (45-112)||(16202836-16202904)
[»] chr4 (2 HSPs)
chr4 (45-113)||(6309356-6309424)
chr4 (18-111)||(19245981-19246070)
[»] chr6 (7 HSPs)
chr6 (45-112)||(17768042-17768109)
chr6 (9-43)||(1803953-1803987)
chr6 (18-112)||(14803261-14803351)
chr6 (18-108)||(29173082-29173168)
chr6 (18-104)||(1688268-1688351)
chr6 (18-113)||(25995535-25995626)
chr6 (18-113)||(26094998-26095089)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 60 - 262
Target Start/End: Complemental strand, 39247482 - 39247280
Alignment:
Q  60 aaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcatacgttagagaatacatacgtcataagattttggatgaatagtccat 159  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  39247482 aaagaagttgtcatgatagttatcaaaaatgattgttcaaatatcactactcatacattagagaacacatacgtcataagattttggattaatagtccat 39247383  T
Q  160 cattgtgtttccaacacattgtaaaactaatgaaaatgatatttctagttaaatgaactacattacaaaaacataatcctcgcacttaatcttctttctc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39247382 cattgtgtttccaacacattgtaaaactaatgaaaatgatatttctagttaaatgaactacattacaaaaacataatcctcgcacttaatcttctttctc 39247283  T
Q  260 act 262  Q
    |||    
T  39247282 act 39247280  T

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Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 337 - 467
Target Start/End: Complemental strand, 39247205 - 39247075
Alignment:
Q  337 tactagttctgttcttaagacataccaacaaatcaacggtggctgataactgataagttgactacccaactttttggaaaatatttctattatataacga 436  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39247205 tactagttctgttcttaagacataccaacaaatcaacagtggctgataactgataagttgactacccaactttttggaaaatatttctattatataacga 39247106  T
Q  437 gagagttatatatatagctacttgttctgtg 467  Q
    |||||||||||||||||||||||||| ||||    
T  39247105 gagagttatatatatagctacttgttttgtg 39247075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 10749657 - 10749567
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactca 112  Q
    ||||| |||||||||||||||||||||| |||    |||||||| |||||||||||||||||| | ||||||| |||| ||||||||||||||||    
T  10749657 tctctttccattgtttttgaccaatagaaaga----gaggaaaaggaagttgtcatgatagttgtcaaaaatggttgttcaaatatcactactca 10749567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 36180596 - 36180684
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactact 110  Q
    |||||||||||| |||||||| |||||| |||    ||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||    
T  36180596 tctctctccattatttttgacaaatagaaaga----gaggaaaaagaagttgtcatgatagttgtaaaaaatagttgttcaaatatcactact 36180684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 28244335 - 28244246
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    ||||| ||||||||||||||| |||||| |||    ||| ||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||    
T  28244335 tctctttccattgtttttgacaaatagaaaga----gagaaaaaagaagttgtcatgatggttgtaaaaaatggttgttcaaatatcactactc 28244246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 36816394 - 36816305
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    ||||| |||||| ||||||||||||||| |||    |||||||| | |||||||||||||||| | |||||||||||| |||||||||||||||    
T  36816394 tctctttccattttttttgaccaatagaaaga----gaggaaaatgcagttgtcatgatagttgtcaaaaatgattgttcaaatatcactactc 36816305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 3933053 - 3933142
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttat-aaaaaatgattgtacaaatatcactactc 111  Q
    |||||||||||||||||| ||||    ||||||| |||||||||| |||||| ||||||| || | ||||| || |||| |||||||||||||||    
T  3933053 tctctctccattgtttttaacca----atagaaagagaggaaaaaaaagttgccatgataattgtcaaaaattgtttgt-caaatatcactactc 3933142  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 36376838 - 36376805
Alignment:
Q  9 tttttattctctctctccattgtttttgaccaat 42  Q
    ||||| ||||||||||||||||||||||||||||    
T  36376838 ttttttttctctctctccattgtttttgaccaat 36376805  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 43333648 - 43333558
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactca 112  Q
    |||||||||||||||||| |||||||||    || |||||||||||||||||||||||||||| ||||||||  |||| |||||||||| |||||    
T  43333648 tctctctccattgtttttaaccaataga----aaaagaggaaaaagaagttgtcatgatagttgtaaaaaatagttgttcaaatatcaccactca 43333558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 41717543 - 41717628
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcact 107  Q
    ||||| |||||||||||| ||||||||| |||    ||||||||||||||||||||||||||| | ||||||| |||| |||||||||||    
T  41717543 tctctttccattgttttttaccaatagaaaga----gaggaaaaagaagttgtcatgatagttgttaaaaatggttgttcaaatatcact 41717628  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 46092929 - 46092848
Alignment:
Q  26 cattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    |||||||||||||||||| | |||    ||||||||| ||||||| |||||| || ||||||||| |||| |||||||||||||||    
T  46092929 cattgtttttgaccaataaaaaga----gaggaaaaaaaagttgtaatgataattgtaaaaaatggttgttcaaatatcactactc 46092848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 18169247 - 18169275
Alignment:
Q  15 ttctctctctccattgtttttgaccaata 43  Q
    |||||||||||||||||||||||||||||    
T  18169247 ttctctctctccattgtttttgaccaata 18169275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 32931899 - 32931871
Alignment:
Q  15 ttctctctctccattgtttttgaccaata 43  Q
    |||||||||||||||||||||||||||||    
T  32931899 ttctctctctccattgtttttgaccaata 32931871  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 42663177 - 42663266
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    |||||||||||||||||| || |    ||||||| | |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||    
T  42663177 tctctctccattgtttttaacta----atagaaagataggaaaaagaagttgtcatgatagttgtaaaaaatggttgttcaaatatcactactc 42663266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 34992313 - 34992225
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactact 110  Q
    ||||| ||||||||||||||||||||||    || ||||||||| ||||||| ||| |||||||| |||||| ||||| ||||||||||||||    
T  34992313 tctctttccattgtttttgaccaataga----aaaagaggaaaaggaagttgacattatagttatcaaaaataattgttcaaatatcactact 34992225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 33223505 - 33223418
Alignment:
Q  20 tctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    ||||||||||||||||| |||||| | |||    ||||||||||||||||||||||||||| | ||||||  || | |||||||||||||||    
T  33223505 tctctccattgtttttggccaataaaaaga----gaggaaaaagaagttgtcatgatagttgtcaaaaatagttattcaaatatcactactc 33223418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 37351968 - 37351879
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    |||||||||||||||||||||||||| | |||    ||| |||||||| ||||||  | |||||||  |||||||||| |||||||||||||||    
T  37351968 tctctctccattgtttttgaccaataaaaaga----gagaaaaaagaaattgtcacaaaagttatatcaaatgattgttcaaatatcactactc 37351879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 38096394 - 38096329
Alignment:
Q  45 atagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactact 110  Q
    ||||||| ||| ||||||||||||||||| ||| || ||||||||  |||| ||||||||||||||    
T  38096394 atagaaagagaagaaaaagaagttgtcataataattgtaaaaaatagttgttcaaatatcactact 38096329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28548230 - 28548188
Alignment:
Q  1 acattatgtttttattctctctctccattgtttttgaccaata 43  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||    
T  28548230 acattatgtttttattctctctctctattctttttaaccaata 28548188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 35005080 - 35005052
Alignment:
Q  15 ttctctctctccattgtttttgaccaata 43  Q
    |||||||||||||||||||||||||||||    
T  35005080 ttctctctctccattgtttttgaccaata 35005052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 9445231 - 9445290
Alignment:
Q  55 aggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcata 114  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  9445231 aggaaaaagaagttgtcatgatagttgtaaaaaatggttgttcaaatatcactactcata 9445290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 27091546 - 27091455
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcat 113  Q
    |||||||||||||||||| || |    ||| ||| ||||||||||||| |||||||||||||| |||||||| ||||| | |||||||||| ||||    
T  27091546 tctctctccattgttttttacta----ataaaaagagaggaaaaagaaattgtcatgatagttgtaaaaaataattgttcgaatatcactattcat 27091455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 17390730 - 17390819
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    ||||||| |||||||||| |||||| || |||    ||||||||| ||||||||||||||||| | ||||||  |||| |||||||||||||||    
T  17390730 tctctcttcattgtttttaaccaattgaaaga----gaggaaaaaaaagttgtcatgatagttgtcaaaaatagttgttcaaatatcactactc 17390819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 51866239 - 51866192
Alignment:
Q  62 agaagttgtcatgatagttataaaaaatgattgtacaaatatcactac 109  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  51866239 agaagttgtcatgatagttgtaaaaaatggttgttcaaatatcactac 51866192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 6841884 - 6841975
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcat 113  Q
    |||||||||||||||||||||||||| | |||    ||| ||||  ||||||||||||||||| | ||||||  |||| ||||||||| |||||||    
T  6841884 tctctctccattgtttttgaccaataaaaaga----gagaaaaagaaagttgtcatgatagttgtcaaaaatagttgttcaaatatcagtactcat 6841975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 23226388 - 23226310
Alignment:
Q  21 ctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatat 103  Q
    |||| |||||||||||||||||||| |||    |||||||||||| ||||||||||| |||| ||||||  |||| |||||||    
T  23226388 ctcttcattgtttttgaccaatagaaaga----gaggaaaaagaaattgtcatgataattatcaaaaatagttgttcaaatat 23226310  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 7648373 - 7648432
Alignment:
Q  53 agaggaaaaagaagttgtcatgatagttat-aaaaaatgattgtacaaatatcactactc 111  Q
    |||| ||||| ||||||||||||||||||| |||||||| |||| ||||||||| |||||    
T  7648373 agagaaaaaaaaagttgtcatgatagttataaaaaaatggttgttcaaatatcattactc 7648432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 47117824 - 47117888
Alignment:
Q  21 ctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaat 89  Q
    ||||||||||||||||||||    ||||||| |||| ||| |||||||||||| ||| |||||||||||    
T  47117824 ctctccattgtttttgacca----atagaaaaagagaaaagagaagttgtcataataattataaaaaat 47117888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 5959478 - 5959506
Alignment:
Q  15 ttctctctctccattgtttttgaccaata 43  Q
    |||||||||||||||||||||||||||||    
T  5959478 ttctctctctccattgtttttgaccaata 5959506  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 39021421 - 39021338
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatca 105  Q
    ||||||| ||||||||||||||||||||    |||||| |||||||||||||||||||||||| | ||||||| |||| |||||||||    
T  39021421 tctctcttcattgtttttgaccaataga----aatagacgaaaaagaagttgtcatgatagttgtcaaaaatggttgttcaaatatca 39021338  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 44086490 - 44086399
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcat 113  Q
    ||||| |||||| ||||||||||||||| |||    |||||||| |||||| |||||||| || | |||||||||||| |||||||||||||||||    
T  44086490 tctctttccattatttttgaccaatagaaaga----gaggaaaaggaagttatcatgataattgtcaaaaatgattgttcaaatatcactactcat 44086399  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 28623112 - 28623078
Alignment:
Q  9 tttttattctctctctccattgtttttgaccaata 43  Q
    |||||||||||||||||||||||||||||||||||    
T  28623112 tttttattctctctctccattgtttttgaccaata 28623078  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 2520021 - 2520086
Alignment:
Q  45 atagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactact 110  Q
    ||||||| |||||||||| ||||| ||||||||||| || |||||  |||| ||||||||||||||    
T  2520021 atagaaagagaggaaaaataagttatcatgatagttgtagaaaatagttgttcaaatatcactact 2520086  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 6162049 - 6162127
Alignment:
Q  26 cattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcacta 108  Q
    |||||||||||||||||||| |||    |||| ||| |||||||||||||||||| | |||||| ||||| ||||||| ||||    
T  6162049 cattgtttttgaccaatagaaaga----gaggtaaaggaagttgtcatgatagttgtcaaaaattattgttcaaatatgacta 6162127  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14228769 - 14228811
Alignment:
Q  1 acattatgtttttattctctctctccattgtttttgaccaata 43  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||    
T  14228769 acatgatgttcttattctctctcttcattgtttttgaccaata 14228811  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 41519942 - 41519976
Alignment:
Q  9 tttttattctctctctccattgtttttgaccaata 43  Q
    |||||||| ||||||||||||||||||||||||||    
T  41519942 tttttattatctctctccattgtttttgaccaata 41519976  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 7596872 - 7596844
Alignment:
Q  15 ttctctctctccattgtttttgaccaata 43  Q
    |||||||||||||||||||||||||||||    
T  7596872 ttctctctctccattgtttttgaccaata 7596844  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 36572784 - 36572874
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactca 112  Q
    |||||||||||||||||| ||||||||| ||| |    ||||||||||||||||||||||||| ||||||||  |||| ||||||||| ||||||    
T  36572784 tctctctccattgtttttaaccaatagaaagata----ggaaaaagaagttgtcatgatagttgtaaaaaattgttgttcaaatatcattactca 36572874  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 6538986 - 6539049
Alignment:
Q  45 atagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    |||||||||||||||||||||||||||   ||| |||| |||||||||||| |||||||||||||||    
T  6538986 atagaaatagaggaaaaagaagttgtc---ataattatcaaaaatgattgttcaaatatcactactc 6539049  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 8897475 - 8897564
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    ||||| |||||||||||||| |||||||    || ||||||||| ||||||||||||||| || | ||||||| |||| |||||||||||||||    
T  8897475 tctctttccattgtttttgatcaataga----aaaagaggaaaaggaagttgtcatgataattgtcaaaaatggttgttcaaatatcactactc 8897564  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 23991112 - 23991027
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcact 107  Q
    |||||||||||| ||||||||||||| | ||| |||    ||||||||||||| ||||||||| | |||||||||||| |||||||||||    
T  23991112 tctctctccattctttttgaccaataaaaagagata----aaaaagaagttgttatgatagttgtcaaaaatgattgttcaaatatcact 23991027  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 35233432 - 35233343
Alignment:
Q  20 tctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcat 113  Q
    ||||||| |||||||||||||||||| |||    ||||||||||||||||| || |||||| ||||||||  |||| ||||||||| |||||||    
T  35233432 tctctcccttgtttttgaccaatagaaaga----gaggaaaaagaagttgttataatagttgtaaaaaatagttgttcaaatatcagtactcat 35233343  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 32053813 - 32053918
Alignment:
Q  1 acattatgtttttattctctctc-tccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaa 99  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| | ||||    |||||||||||||| |||| |||||| | | |||   |||| |||    
T  32053813 acattatgtttttattctctctcttccattgtttttgactaataaaaagaa----aggaaaaagaagttatcataatagttgtcagaaaaagttgttcaa 32053908  T
Q  100 atatcactac 109  Q
    ||||||||||    
T  32053909 atatcactac 32053918  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 16202836 - 16202904
Alignment:
Q  45 atagaaatagaggaaaaagaagttgtca-tgatagttataaaaaatgattgtacaaatatcactactca 112  Q
    ||||||| |||| ||||||||||||||| | | |||| ||  |||||||||| ||||||||||||||||    
T  16202836 atagaaagagagaaaaaagaagttgtcactaaaagttgtatgaaatgattgttcaaatatcactactca 16202904  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 6309356 - 6309424
Alignment:
Q  45 atagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcat 113  Q
    ||||||| |||  |||||||||||||||| |||||| ||||||||  |||| |||||||||||||||||    
T  6309356 atagaaagagaaaaaaaagaagttgtcataatagttgtaaaaaatagttgttcaaatatcactactcat 6309424  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 19245981 - 19246070
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactc 111  Q
    ||||| |||||| ||||||||||||||| |||    |||||||| |||||| ||||||||||| | ||||||| ||||  ||||||||||||||    
T  19245981 tctctttccattatttttgaccaatagaaaga----gaggaaaaggaagttatcatgatagttgtcaaaaatggttgtttaaatatcactactc 19246070  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 17768042 - 17768109
Alignment:
Q  45 atagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactca 112  Q
    ||||||| ||||||||||||||||||||| |||||| | |||||||  ||| ||||||||||| ||||    
T  17768042 atagaaagagaggaaaaagaagttgtcatcatagttgtcaaaaatggatgttcaaatatcactgctca 17768109  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 1803953 - 1803987
Alignment:
Q  9 tttttattctctctctccattgtttttgaccaata 43  Q
    |||||||||||||||||||||||||||||||||||    
T  1803953 tttttattctctctctccattgtttttgaccaata 1803987  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 14803351 - 14803261
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactca 112  Q
    |||||||||||| |||||||| |||| |    || |||||||| ||||||||||||||||||| | |||||| |||||  |||||||| ||||||    
T  14803351 tctctctccattatttttgactaataaa----aaaagaggaaatagaagttgtcatgatagttgtcaaaaataattgtttaaatatcagtactca 14803261  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 29173082 - 29173168
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcacta 108  Q
    ||||||||||||||||||||| |||||| |||    ||| |||||||||||||||||||| || | | ||| | |||| ||||||||||||    
T  29173082 tctctctccattgtttttgactaatagaaaga----gagaaaaaagaagttgtcatgataattgtcataaaaggttgttcaaatatcacta 29173168  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 1688351 - 1688268
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttat-aaaaaatgattgtacaaatatc 104  Q
    |||||||||||||||||| ||||    ||| ||| |||||||||||||||||||| |||| || | |||||||| |||| ||||||||    
T  1688351 tctctctccattgtttttaacca----ataaaaagagaggaaaaagaagttgtcaagataattgtcaaaaaatggttgttcaaatatc 1688268  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 25995535 - 25995626
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcat 113  Q
    ||||||||| || ||||||||||||||| |||    ||| |||| |||||||||||| ||||| | ||||||| |||| |||||| ||| ||||||    
T  25995535 tctctctcctttatttttgaccaatagaaaga----gagaaaaatgaagttgtcatggtagttgtcaaaaatggttgttcaaataacacaactcat 25995626  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 26094998 - 26095089
Alignment:
Q  18 tctctctccattgtttttgaccaatagatagaaatagaggaaaaagaagttgtcatgatagttataaaaaatgattgtacaaatatcactactcat 113  Q
    ||||||||| || ||||||||||||||| |||    ||| |||| |||||||||||| ||||| | ||||||| |||| |||||| ||| ||||||    
T  26094998 tctctctcctttatttttgaccaatagaaaga----gagaaaaatgaagttgtcatggtagttgtcaaaaatggttgttcaaataacacaactcat 26095089  T

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