View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11956_high_1 (Length: 828)

Name: NF11956_high_1
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11956_high_1
NF11956_high_1
[»] chr3 (1 HSPs)
chr3 (11-812)||(40289814-40290608)


Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 11 - 812
Target Start/End: Complemental strand, 40290608 - 40289814
Alignment:
Q  11 caaaggtattatattgtgaaaagaaagagagagtatatgaattgaagcctggtctaaaggtgttcaagaagagtttgtcatttgatatatataatcaaca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40290608 caaaggtattatattgtgaaaagaaagagagagtatatgaattgaagcctggtctaaaggtgttcaagaagagtttgtcatttgatgtatataatcaaca 40290509  T
Q  111 aattaaatatgtttcttaactagtgtgtggaaaggagtataccattaatggttaaagtgtattatgctgtgaaaagaaagagagggtatgtgaattgaag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  40290508 aattaaatatgtttcttaactagtgtgtggaaaggagtataccattaatggttaaagtgtattatgttgtgaaaagaaagagagagtatgtgaattgaag 40290409  T
Q  211 cctagtctaaaggtgtttaagaagagtctgtcatttgatacattcnnnnnnnaaatataaagtttatgtgagttgggtattttgct-nnnnnnnnnnntg 309  Q
    |||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||| |||||||             |    
T  40290408 cctagtctaaaggtgtttaagaagagtctgtcatttgatatattctttttttaaatataaagtttatgtgagttgggttttttgctcaaaaaaaaaaaag 40290309  T
Q  310 tgagttgggttttgaggattcatcaggatagtcgtcaaggtttaaagatgttcttacaccaggatagtatttaaggtttagagatgttcttacatcagta 409  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40290308 tgagttgggttttgaggattcatcaggatagtcgtcaaggtttagagatgttcttacatcaggatagtatttaaggtttagagatgttcttacatcagta 40290209  T
Q  410 acgaaagttgaactcacgtttttgtggatttgatttcaactgtttaccaactgaaccaatcttcattaaccatcatcgatgttttcaagtgatcattcat 509  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40290208 acgaaaattgaactcacgtttttgtggatttgatttcaactttttatcaactgaaccaatcttcattaaccatcatcgatgttttcaagtgatcattcat 40290109  T
Q  510 acttgctttatatgatccatcttttccgttgattattattagtatcatagnnnnnnntaactcataattaattgtccaaaaagaataactacttaattag 609  Q
    | |||||||||||||||||||||||| ||||||||||| |||||||||||       ||||||    |||||||||||||||||||||||||||||||||    
T  40290108 atttgctttatatgatccatcttttcagttgattattactagtatcatag-aaaaaataactc----ttaattgtccaaaaagaataactacttaattag 40290014  T
Q  610 ccacttgcaataattttatttgtagctgaaaatattggaaatccggcgaagttaattaatgagaaaatccaggagctttgttatataactagttatgtga 709  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  40290013 ccacttgcaataa-tttatttgtagctaaaaatattggaaatccggcgaagttaattaatgagaaaatccaggagctttgt--tataactagttatgtga 40289917  T
Q  710 gtcgacacttgagagacaaagattggaaatcttcaaccgttaagagccataactgaattctactatatttttactatatcacaaattaaagtaacaacac 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40289916 gtcgacacttgagagacaaagattggaaatcttcaaccgttaagagccataactgaattctactatatttttactacatcacaaattaaagtaacaacac 40289817  T

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