View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11956_high_18 (Length: 244)
Name: NF11956_high_18
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37090480 - 37090705
Alignment:
| Q |
1 |
ttattctcatggactacaaccttgttgtctgtctgtcccaataagctgatcatagaacgggctttaaccattccaagcttcattctcttctttgcaatta |
100 |
Q |
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| T |
37090480 |
ttattctcattgactacaaccttgttgtctgtctgacccaataagctgatcatagaacgggctttaaccattccaagcttcattctcttctttgcaatta |
37090579 |
T |
|
| Q |
101 |
ccactggcttcttctcatcatcattacccaaggtatcgtcattctcatcaatgattttcttttcaagatcagaattagaagatgaagcactatcaacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37090580 |
ccactggcttcttctcatcatcattacccaaggtatcgtcattctcatcaatgattttcttttcaagatcagaattagaagatgaagcactatcaacagc |
37090679 |
T |
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| Q |
201 |
attgtttggttcagtagtagtagtag |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37090680 |
attgtttggttcagtagtagtagtag |
37090705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 37096847 - 37097072
Alignment:
| Q |
1 |
ttattctcatggactacaaccttgttgtctgtctgtcccaataagctgatcatagaacgggctttaaccattccaagcttcattctcttctttgcaatta |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37096847 |
ttattctcattgactacaaccttgttgtctgtctgtcccaataagctgctcatagatcgggctttaaccattccaagcttcattctcttctttgcaatta |
37096946 |
T |
|
| Q |
101 |
ccactggcttcttctcatcatcattacccaaggtatcgtcattctcatcaatgattttcttttcaagatcagaattagaagatgaagcactatcaacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37096947 |
ccactggcttcttctcatcatcattacccaaggtatcgtcattctcatcaatgattttcttttcaagatcagaattagaagatgaagcactatcaacagc |
37097046 |
T |
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| Q |
201 |
attgtttggttcagtagtagtagtag |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37097047 |
attgtttggttcagtagtagtagtag |
37097072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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