View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11956_high_4 (Length: 580)
Name: NF11956_high_4
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 69 - 573
Target Start/End: Original strand, 21242684 - 21243189
Alignment:
| Q |
69 |
taacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattac |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242684 |
taacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattac |
21242783 |
T |
|
| Q |
169 |
cagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcat |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242784 |
cagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcat |
21242883 |
T |
|
| Q |
269 |
cgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcg |
368 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242884 |
cgcagcgtcgttgatgataaacatggatgatgatttagctggggaattaaacaatgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcg |
21242983 |
T |
|
| Q |
369 |
gttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtga |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242984 |
gttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtga |
21243083 |
T |
|
| Q |
469 |
cgaacttgtgggttgtgccaccgatgattcttgctttagcgaaacaaagtgtggttgggaaatatgatgtttcttctctgaagagtattgggtct-gtgc |
567 |
Q |
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| T |
21243084 |
cgaacttgtgggttgtgccaccgatgattcttgctttagcgaaacagagtgtggttgggaaatatgatgtttcttctttgaagagtattgggtctggtgc |
21243183 |
T |
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| Q |
568 |
tgctcc |
573 |
Q |
| |
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|||||| |
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| T |
21243184 |
tgctcc |
21243189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 69 - 559
Target Start/End: Original strand, 21258460 - 21258939
Alignment:
| Q |
69 |
taacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattac |
168 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||| ||| |
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| T |
21258460 |
taacaaactttatatctgataggtaatgcaacaggttgaaattcgaacttcacgagttttgaggcgttgatagaatcagctggggaagtaacagaaatac |
21258559 |
T |
|
| Q |
169 |
cagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcat |
268 |
Q |
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| T |
21258560 |
cagaaagcaacgtgaaacagactgaca-------acttctgtactcatcaggaactacaggagtgagcaaaggtgtgatactcacccacaagaacttcat |
21258652 |
T |
|
| Q |
269 |
cgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcg |
368 |
Q |
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||| | || ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
21258653 |
cgcgacttcattgatgataaacatggatgatgatttagcaggggaattaaat---gtgttcctctgcgttttaccgatgtttcatgtgtttagattggcg |
21258749 |
T |
|
| Q |
369 |
gttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtga |
468 |
Q |
| |
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|||||||||||||| |||||||||||||||||| | |||||||| | |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
21258750 |
gttataacatacgcgcagctaaggagaggaagtgcggtggtttcaacggggagatttgagttagaggg-tttttgaaggtgattgaaaagtatagagtga |
21258848 |
T |
|
| Q |
469 |
cgaacttgtgggttgtgccaccgatgattcttgctttagcgaaacaaagtgtggttgggaaatatgatgtttcttctctgaagagtattgg |
559 |
Q |
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| | ||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21258849 |
caactttgtgggttgtgccatcgatgaatcttgctttggcgaaacagagtgtggttgggaaatatgatgtttcttcgttgaagagtattgg |
21258939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 69 - 480
Target Start/End: Original strand, 21253940 - 21254357
Alignment:
| Q |
69 |
taacaaactttatatctaataggtaat----gcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaa |
164 |
Q |
| |
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|||||||||||| |||||||||||||| | |||||||||| |||||||||||| ||||||||| ||||||||||| ||||| | |||||||||||| |
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| T |
21253940 |
taacaaactttacatctaataggtaattaatgtaacgggttcaaattcaaacttcaccagttttgagtcgttgattgaaacagcatgagaagtaacagaa |
21254039 |
T |
|
| Q |
165 |
ttaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaact |
264 |
Q |
| |
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||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||| |||||||||||||| || ||||| || || ||||||||| |
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| T |
21254040 |
ttaccagaaaacgatgtgaaacaaagcgatacagcggctttgttgtactcatcaggaacaacaggagtgagcaagggcgtgatacttacccacaagaacg |
21254139 |
T |
|
| Q |
265 |
tcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgt---ttcatgtgtttgg |
361 |
Q |
| |
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|||| || | |||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||| | |
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| T |
21254140 |
tcattgcggtggcgttaatgattaacatggacgatgatttagcaggggaattaaacaacgtgttcttctgcgttttaccgatgtttattcatgtgtttag |
21254239 |
T |
|
| Q |
362 |
attggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtat |
461 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
21254240 |
attggtggttataacatacgcgcagctaaggagaggaagtacggtggtttcaacggggaggtttgagttagaggg-tttttgaaggtgattgagaagcat |
21254338 |
T |
|
| Q |
462 |
aaagtgacgaacttgtggg |
480 |
Q |
| |
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| ||||||||| ||||||| |
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| T |
21254339 |
agagtgacgaatttgtggg |
21254357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21242701 - 21242613
Alignment:
| Q |
1 |
tagatataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaatctaacaaactttatatctaata |
89 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
21242701 |
tagatataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaatctaactaactttgtatataata |
21242613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21258476 - 21258411
Alignment:
| Q |
2 |
agatataaagtttgttatgtagagaatgatgagaacagctaactagtcaaactataactaaccaat |
67 |
Q |
| |
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|||||||||||||||||| ||| |||||||||| ||||||||||||| |||||| |||| ||||| |
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| T |
21258476 |
agatataaagtttgttatatagcgaatgatgagtacagctaactagtgtaactatcactatccaat |
21258411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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