View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11956_low_10 (Length: 302)
Name: NF11956_low_10
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 139 - 292
Target Start/End: Original strand, 3872885 - 3873038
Alignment:
| Q |
139 |
caaaccttcgtttctcgaaatctttcaagactcttaaaaattcataatacttatgcttctcatctttaaaagcatcctttatttcattgagatacatctt |
238 |
Q |
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| T |
3872885 |
caaaccttcgtttctcgaaatctttcaagactcttaaaaattcataatacttatgcttctcatctttaaaagcatcctttatttcattgagatacatctt |
3872984 |
T |
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| Q |
239 |
ggcttcatcataagttannnnnnnctttgcagctgatgatccccttgttctctg |
292 |
Q |
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| T |
3872985 |
ggcttcatgataagttatttttttctttgcagctgatgatccccttgttctctg |
3873038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 3872775 - 3872814
Alignment:
| Q |
19 |
accacaccctccagatcaattctataaatacatcaaagtg |
58 |
Q |
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| T |
3872775 |
accacaccctccagatcaattctataaatacatcaaagtg |
3872814 |
T |
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