View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11956_low_11 (Length: 285)
Name: NF11956_low_11
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 37090489 - 37090220
Alignment:
| Q |
4 |
atgagaataacaagtaagaccgaaagattacaataaaattattattacatgtatttgaggttaatgtgaagaattttaatgctataatttgtattatttt |
103 |
Q |
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| T |
37090489 |
atgagaataacaagtaagaccgaaagattacaataaaattattattacatgtatttgaggttaatgtgaagaattttaatgctataatttgtattatttt |
37090390 |
T |
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| Q |
104 |
ggtgctagtactatcatcactactatgtcctacatattaattaaacttaagcttgtgctttattttggtacttttatgtgatataattcaaatattatta |
203 |
Q |
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| T |
37090389 |
ggtgctagtactatcatcactactatgtcctatat----attaaacttaagcttgtgctttattttggtacttttatgtgatataattcaaatattatta |
37090294 |
T |
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| Q |
204 |
ttgtttttattttcttaatatga---atgatgctattagttgtagtatgttttcgtttcatctttaactccgtc |
274 |
Q |
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| T |
37090293 |
ttgtttttattttcttaatatgaatgatgatgctattagttgtagtatgttttcatttcatctttaactccgtc |
37090220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 37096856 - 37096750
Alignment:
| Q |
4 |
atgagaataacaagtaagaccgaaagattacaataaaattattattacatgtatttg-aggttaatgtgaagaattttaatgctataatttgtattattt |
102 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||| |||||| |||| | | ||||| |||||||| |
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| T |
37096856 |
atgagaataacaagtaagaccgaaagagtacaacaaaattattattacatgtatttgaagtttaatttgaagagttttta----agaatttctattattt |
37096761 |
T |
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| Q |
103 |
tggtgctagta |
113 |
Q |
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| T |
37096760 |
tggtgctagta |
37096750 |
T |
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