View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11956_low_12 (Length: 263)
Name: NF11956_low_12
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 32371280 - 32371050
Alignment:
| Q |
28 |
tacaatcaacccttcatcgggaactgaatgtatctgatacaaaacacataaaaaacacgtatttgttagacacaagtgtagaatgaacatcctgaaaaat |
127 |
Q |
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| T |
32371280 |
tacaatcaactcttcatcaggaactgaatgtatctgatacaaaacacacaaaaaacacgtctttgttagacacaagtgtagaatgaacatcctgggaaat |
32371181 |
T |
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| Q |
128 |
taactaaatccaagataagttccgagaagtataacttcttctttcagaaacactcacacatgtggttatactctttttctagtcaacactcaacatacag |
227 |
Q |
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| T |
32371180 |
taactaaatccaagataagttccgagaagtataatttcttcattcagaaacactcacacatgtggttatactctttttctagtcaacactcaacatacag |
32371081 |
T |
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| Q |
228 |
aaacatgttcttgattttatattccaaataa |
258 |
Q |
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| T |
32371080 |
aaacatgttcttgattttatattccaaataa |
32371050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 32356195 - 32356091
Alignment:
| Q |
111 |
tgaacatcctgaaaaattaactaaatccaagataagttccgagaagtataacttcttctttcagaaacactcacacatgtggttatactctttttctagt |
210 |
Q |
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| T |
32356195 |
tgaacaccttgagaaattaactcaatccaatataagttccgagaagtataacttcttcattcagaaatactcacacatgtggtaatactctttttctagt |
32356096 |
T |
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| Q |
211 |
caaca |
215 |
Q |
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||||| |
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| T |
32356095 |
caaca |
32356091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 32366182 - 32366253
Alignment:
| Q |
28 |
tacaatcaacccttcatcgggaactgaatgtatctgatacaaaacacataaaaaacacgtatttgttagaca |
99 |
Q |
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| T |
32366182 |
tacaatcaactcttcaccgggaactgattgtatccgatacaaaacacacaaaaaacacgtctttgttagaca |
32366253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 32370743 - 32370697
Alignment:
| Q |
217 |
tcaacatacagaaacatgttcttgattttatattccaaataaaattg |
263 |
Q |
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| T |
32370743 |
tcaacatacaaaaacatgttcttgattttatattccaaataacattg |
32370697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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