View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11956_low_17 (Length: 246)
Name: NF11956_low_17
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_low_17 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 36810693 - 36810922
Alignment:
| Q |
1 |
tgtccatattttgctacacaataagcatcggtagtccccctcccattatttgatttcatcggcatcaaacccgaagcattcaatatcccaacttcaagaa |
100 |
Q |
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| T |
36810693 |
tgtccatattttgctacacaataagcatcggtagtccccctcccattatttgatttcatcggcatcaaacccgaagcattcaatatcccaacttcaagaa |
36810792 |
T |
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| Q |
101 |
ctccaatacttgacttccacagctgtttcgccgtagggcgaagatcactactgtagtgagttgattcatccaaaacatgataaccaccttctagacagac |
200 |
Q |
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| T |
36810793 |
ctccaatacttgacttccacagctgtttcgccgtagggcgaagatcactactgtagtgagttgattcatccaaaacatgataaccaccttctagacagac |
36810892 |
T |
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| Q |
201 |
cctcatatgaatcctgcttgcaaacttgat |
230 |
Q |
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| T |
36810893 |
cctcatatgaatcctgcttgcaaacttgat |
36810922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 18372292 - 18372248
Alignment:
| Q |
162 |
tgattcatccaaaacatgataaccaccttctagacagaccctcat |
206 |
Q |
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| T |
18372292 |
tgattcatccaaaacatgataaccaccttctagacataccctcat |
18372248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 22629726 - 22629770
Alignment:
| Q |
162 |
tgattcatccaaaacatgataaccaccttctagacagaccctcat |
206 |
Q |
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| T |
22629726 |
tgattcatccaaaacatgataaccaccttgtagacataccctcat |
22629770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 13758 - 13978
Alignment:
| Q |
4 |
ccatattttgctacacaataagcatcggtagtccccctcccattatttgatttcatcggcatcaaacccgaagcattcaatatcccaacttcaagaactc |
103 |
Q |
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| T |
13758 |
ccatatttcgctacacaataagcatcagttgtccccctcccatctttatttttcatcggcatcaaaccctgagcactcaatatcccaacttcaagaacac |
13857 |
T |
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| Q |
104 |
caatacttgacttccacagctgtttcgccgtagggcgaagatcactactgtagtgagttgattcatccaaaacatgataaccaccttctagacagaccct |
203 |
Q |
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| T |
13858 |
caattccagatttccagagctgtttggccgttgggcgaagatcactgctgtagtgagttgattcatccaaaacatgataaccaccttctagacaaaccct |
13957 |
T |
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| Q |
204 |
catatgaatcctgcttgcaaa |
224 |
Q |
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| T |
13958 |
catgtgaatcctacttgcaaa |
13978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 24950555 - 24950624
Alignment:
| Q |
85 |
atcccaacttcaagaactccaatacttgacttccacagctgtttcgccgtagggcgaagatcactactgt |
154 |
Q |
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| T |
24950555 |
atccctacttctagaataccaatacttgacttccatagctgcttcgccgttggcctaagatcactactgt |
24950624 |
T |
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