View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11956_low_3 (Length: 595)

Name: NF11956_low_3
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11956_low_3
NF11956_low_3
[»] chr1 (5 HSPs)
chr1 (15-222)||(14406303-14406510)
chr1 (438-577)||(14405948-14406087)
chr1 (277-355)||(14406170-14406248)
chr1 (286-353)||(33977643-33977710)
chr1 (115-157)||(14137327-14137369)
[»] chr8 (2 HSPs)
chr8 (109-161)||(30139695-30139747)
chr8 (179-218)||(26252086-26252125)
[»] chr5 (1 HSPs)
chr5 (285-352)||(5900806-5900873)
[»] chr2 (1 HSPs)
chr2 (309-352)||(3271347-3271390)
[»] chr7 (2 HSPs)
chr7 (107-161)||(41311746-41311799)
chr7 (106-154)||(34660261-34660308)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 8e-81; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 14406510 - 14406303
Alignment:
Q  15 cacagacagccaattggattgctttactattttaaacttgcacatccttcgttgaagagtgtcacatctgtcaaatgacacctaaaaagctagaaatttg 114  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14406510 cacagacagccaattggattgctttactattttaaaattgcacgtccttcgttgaagagtgtcacatctgtcaaatgacacct-aaaagctagaaatttg 14406412  T
Q  115 aaatttcttccttactctatgcaatgtgaatatcaaattggttcttaac-nnnnnnnnaaaattttgcaagttggtcccaattttttaaaactttcaaac 213  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||    
T  14406411 aaatttcttccttactctatacaatgtgaatatcaaattggttcttaactttttttttaaaattttgcaagttggtcccaattttttaaaactttcaaac 14406312  T
Q  214 tgaccccta 222  Q
    | |||||||    
T  14406311 taaccccta 14406303  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 438 - 577
Target Start/End: Complemental strand, 14406087 - 14405948
Alignment:
Q  438 tttccaatgacttcatacaaacacgcctcatgtcatccccgaaagatttcctttggtgtgtcgacaaagtgacaaacattaccttaaaactcacacacta 537  Q
    |||||||| ||||||| ||||||||||||||||||||    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  14406087 tttccaattacttcatccaaacacgcctcatgtcatcaagaaaagatttcctttagtgtgtagacaaagtgacaaacattaccttaaaactcacacacta 14405988  T
Q  538 catttctttgaattgaatagatatagataagatacattag 577  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14405987 catttctttgaattgaatagatatagataagatacattag 14405948  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 14406248 - 14406170
Alignment:
Q  277 agtacctatttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaataca 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14406248 agtacctatttttcaaatttcaagtatgactcaaaacttttaaaatttataaaggcaacccaaaaatgttaacaataca 14406170  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 33977710 - 33977643
Alignment:
Q  286 ttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaata 353  Q
    ||||||| |||||||| |||| || ||| |||||| |||||||||  | |||||||||||||||||||    
T  33977710 ttttcaattttcaagtttgacccataacatttaaattttataaaaatagcccaaaaatgttaacaata 33977643  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 14137369 - 14137327
Alignment:
Q  115 aaatttcttccttactctatgcaatgtgaatatcaaattggtt 157  Q
    |||||||||| ||||||||| |||||||||| |||||||||||    
T  14137369 aaatttcttcattactctatacaatgtgaatctcaaattggtt 14137327  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 30139747 - 30139695
Alignment:
Q  109 aatttgaaatttcttccttactctatgcaatgtgaatatcaaattggttctta 161  Q
    ||||| ||||| |||||||||||||| |||||||||||| |||||||||||||    
T  30139747 aattttaaattgcttccttactctatacaatgtgaatattaaattggttctta 30139695  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 26252125 - 26252086
Alignment:
Q  179 tgcaagttggtcccaattttttaaaactttcaaactgacc 218  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  26252125 tgcaagttggtcccaatttttttaaacttccaaactgacc 26252086  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 5900806 - 5900873
Alignment:
Q  285 tttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaat 352  Q
    |||||| ||||||||   |||| |||||||||||||||||||||| | | ||||||||||||||||||    
T  5900806 tttttccaatttcaaaattgacccaaaacttttaaaatttataaatgtagcccaaaaatgttaacaat 5900873  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 3271347 - 3271390
Alignment:
Q  309 aaaacttttaaaatttataaaagcaacccaaaaatgttaacaat 352  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  3271347 aaaacttttaaaatttataaaagcaacccaaaaatattcacaat 3271390  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 41311746 - 41311799
Alignment:
Q  107 gaaatttgaaatttcttccttactctatgcaatgtgaatatcaaattggttctta 161  Q
    ||||||||||||| |||| |||||| || |||||||||| |||||||||||||||    
T  41311746 gaaatttgaaattccttctttactcaatacaatgtgaat-tcaaattggttctta 41311799  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 34660308 - 34660261
Alignment:
Q  106 agaaatttgaaatttcttccttactctatgcaatgtgaatatcaaattg 154  Q
    |||||||| |||||||||||||||||||  |||||||||| ||||||||    
T  34660308 agaaattt-aaatttcttccttactctaaacaatgtgaatctcaaattg 34660261  T

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