View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11956_low_5 (Length: 447)

Name: NF11956_low_5
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11956_low_5
NF11956_low_5
[»] chr4 (3 HSPs)
chr4 (9-404)||(29728382-29728778)
chr4 (370-403)||(23149866-23149899)
chr4 (370-403)||(28485799-28485832)
[»] chr2 (2 HSPs)
chr2 (217-318)||(415963-416063)
chr2 (21-92)||(415770-415842)
[»] chr8 (4 HSPs)
chr8 (186-282)||(37213915-37214010)
chr8 (171-271)||(37216084-37216184)
chr8 (12-106)||(37216267-37216362)
chr8 (370-404)||(26413398-26413432)
[»] chr5 (1 HSPs)
chr5 (227-321)||(1540289-1540383)
[»] chr6 (1 HSPs)
chr6 (370-404)||(19745340-19745374)
[»] chr1 (2 HSPs)
chr1 (370-404)||(9922207-9922241)
chr1 (370-404)||(40905824-40905858)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 29728382 - 29728778
Alignment:
Q  9 aatgagggtaataaaccaactccactcacaagcatattcaaaccgacaaagaaaaacaaccaagtagataattagcaagcataagctaaaaa-cacttta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29728382 aatgagggtaataaaccaactccactcacaagcatattcaaaccgacaaagaaaaacaaccaagtagataattagcaagcataagctaaaaaacacttta 29728481  T
Q  108 accataatatccaaacacaatttaattagcattaaataacaaagatatctctgatctattctaagaaatttcaacaaagaaacaatgaacttaataattg 207  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29728482 accataatatccaaacacaatttaattagcattaaataacaa-gatatctctgatctattctaagaaatttcaacaaagaaacaatgaacttaatcattg 29728580  T
Q  208 agtttatgaaataaaacccaccaattgtgggaacagtagataaaacttctccaatgtgaagcttgtacaatatagttgtctttccagcagcatcaagacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29728581 agtttatgaaataaaacccaccaattgtgggaacagtagataaaacttctccaatgtgaagcttgtacaatatagttgtctttccagcagcatcaagacc 29728680  T
Q  308 aagcatgacaacctaaaccacaccaaatttgaagaattataatcaaaatattgc-nnnnnnnaaatgacaagtgttagtatgttaattgttatgttag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  29728681 aagcatgacaacctaaaccacaccaaatttgaagaattataatcaaaatattgctttttttttaatgacaagtgttagtatgttaattgttatgttag 29728778  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 23149866 - 23149899
Alignment:
Q  370 aatgacaagtgttagtatgttaattgttatgtta 403  Q
    |||||||| |||||||||||||||||||||||||    
T  23149866 aatgacaaatgttagtatgttaattgttatgtta 23149899  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 28485832 - 28485799
Alignment:
Q  370 aatgacaagtgttagtatgttaattgttatgtta 403  Q
    |||||||| |||||||||||||||||||||||||    
T  28485832 aatgacaaatgttagtatgttaattgttatgtta 28485799  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 415963 - 416063
Alignment:
Q  217 aataaaacccaccaattgtgggaacagtagataaaacttctccaatgtgaagcttgtacaatatagttgtctttccagcagcatcaagaccaagcatgac 316  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||  | |  ||||||||||||||||||    
T  415963 aataaaacccaccaattgtaggaacagtagatataacttctccaatgtggagcttgtacaatatagttgt-tttctggaaaaatcaagaccaagcatgac 416061  T
Q  317 aa 318  Q
    ||    
T  416062 aa 416063  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 415770 - 415842
Alignment:
Q  21 aaaccaactccactcacaagcatattcaaaccgacaaagaaa-aacaaccaagtagataattagcaagcataa 92  Q
    ||||||||| |||| ||||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||||    
T  415770 aaaccaacttcactaacaagcatatttaaacagacaaagaaacaacaaccaagtagataactagcaagcataa 415842  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 37214010 - 37213915
Alignment:
Q  186 gaaacaatgaacttaataattgagtttatgaaataaaacccaccaattgtgggaacagtagataaaacttctccaatgtgaagcttgtacaatatag 282  Q
    ||||||||||| ||||| || ||||||||| |||||||||||| ||| || |||| ||||||||||||||||||||||||||| |||||||||||||    
T  37214010 gaaacaatgaatttaattat-gagtttatggaataaaacccactaatagtaggaagagtagataaaacttctccaatgtgaaggttgtacaatatag 37213915  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 37216184 - 37216084
Alignment:
Q  171 agaaatttcaacaaag-aaacaatgaacttaataattgagtttatgaaataaaacccaccaattgtgggaacagtagataaaacttctccaatgtgaagc 269  Q
    |||||||||||||| | |||||||||| ||||| |  ||||||||| ||||||| ||||||||||| ||| ||||||||||||||| ||||||||| |||    
T  37216184 agaaatttcaacaatggaaacaatgaatttaattac-gagtttatggaataaaatccaccaattgtaggagcagtagataaaacttgtccaatgtggagc 37216086  T
Q  270 tt 271  Q
    ||    
T  37216085 tt 37216084  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 37216362 - 37216267
Alignment:
Q  12 gagggtaataaaccaactccactcacaagcatattcaaaccgacaaagaaa-aacaaccaagtagataattagcaagcataagctaaaaacacttt 106  Q
    |||||||||| |  ||||||||| |||| ||| |  ||||  ||||||||| || |||||||||||||| ||||||||||||||||||||| ||||    
T  37216362 gagggtaatagaaaaactccactaacaaacatttgtaaacacacaaagaaacaaaaaccaagtagataactagcaagcataagctaaaaactcttt 37216267  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 26413398 - 26413432
Alignment:
Q  370 aatgacaagtgttagtatgttaattgttatgttag 404  Q
    |||||||| ||||||||||||||||||||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgttag 26413432  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 1540383 - 1540289
Alignment:
Q  227 accaattgtgggaacagtagataaaacttctccaatgtgaagcttgtacaatatagttgtctttccagcagcatcaagaccaagcatgacaacct 321  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||| |  ||||| || || ||||||||||||||||||||||| |||||||    
T  1540383 accaatagtgggaacagtagataaaacttcaccaatgtgaagtttgtagagaatagtagttttgccagcagcatcaagaccaagcatcacaacct 1540289  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 19745374 - 19745340
Alignment:
Q  370 aatgacaagtgttagtatgttaattgttatgttag 404  Q
    |||||||| ||||||||||||||||||||||||||    
T  19745374 aatgacaattgttagtatgttaattgttatgttag 19745340  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 9922241 - 9922207
Alignment:
Q  370 aatgacaagtgttagtatgttaattgttatgttag 404  Q
    |||||||| ||||||||||||||||||||||||||    
T  9922241 aatgacaaatgttagtatgttaattgttatgttag 9922207  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 40905858 - 40905824
Alignment:
Q  370 aatgacaagtgttagtatgttaattgttatgttag 404  Q
    |||||||| ||||||||||||||||||||||||||    
T  40905858 aatgacaaatgttagtatgttaattgttatgttag 40905824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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