View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11956_low_6 (Length: 404)
Name: NF11956_low_6
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 176 - 386
Target Start/End: Original strand, 3657170 - 3657391
Alignment:
| Q |
176 |
atttacagcaccaaataccaattagacaaagtccaatcaagttc-----------agtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg |
264 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3657170 |
atttacagaaccaaataccgattagacagagtccaatcaagttctcctagaatacagtcaaacattacaaatcaaatgtaaacaaacaaagccttaaatg |
3657269 |
T |
|
| Q |
265 |
ataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtcctgctctccattttaagtggcaatgcagctgagaacagaagcttctca |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3657270 |
ataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtcttgctctccattttaagcggcaatgcagctgagaacagaagcttctca |
3657369 |
T |
|
| Q |
365 |
tgatgtacctgaaactgctctt |
386 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3657370 |
tgatgtacctgaaactgctctt |
3657391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 3647537 - 3647738
Alignment:
| Q |
9 |
aatttcatgtttttcggtggtttcatgtgtatatcaacttattaaaaggttagtaaatcctatttaatgttgcgattttcacgtgataagt--------- |
99 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3647537 |
aatttcatgttttccggtggtttcatgtgtatattaacttattaaaaggttagtaaatcctatttaatgttgcgattttcacgtgataagtcattcatta |
3647636 |
T |
|
| Q |
100 |
gattacaactaacattcagaaaacaaatggaaataattcaataattgttgagaaggtagcattacaaatccatttaatttacagcaccaaataccaatta |
199 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3647637 |
cattacaactaacatccagaaaacaaatggaaataattcaatgattgttgagaagggagcattacaaatccatttaatttacaaaaccaaataccaatta |
3647736 |
T |
|
| Q |
200 |
ga |
201 |
Q |
| |
|
|| |
|
|
| T |
3647737 |
ga |
3647738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 3655552 - 3655690
Alignment:
| Q |
63 |
aaatcctatttaatgttgcgattttcacgtgataagtgattacaactaacattcagaaaacaaatggaaataattcaataattgttgagaaggtagcatt |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3655552 |
aaatcctatttaatgttgcgattttcacgtgataagtgattacaactaacattcagaaaacaaatggaaataattcaataattgttgagaagggagcatt |
3655651 |
T |
|
| Q |
163 |
acaaatccatttaatttacagcaccaaataccaattaga |
201 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3655652 |
gcaaatccatttaatttacagaaccaaataccaattaga |
3655690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 386
Target Start/End: Original strand, 3649140 - 3649280
Alignment:
| Q |
237 |
caaatgtaaacaaacaaagccttaaatgataattttatgacatttcgcgacaaattgttcacaccattactcttcaagtc----ctgctctccattttaa |
332 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| || ||||| ||||| |||| |
|
|
| T |
3649140 |
caaatgtaaacaaacaaagccttacatgataatgttatgacattt-------------tcacacttttactcttcaaatcagttctgctttccatcttaa |
3649226 |
T |
|
| Q |
333 |
gtggcaatgcagctgagaacagaagcttctcatgatgtacctgaaactgctctt |
386 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
3649227 |
gtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctt |
3649280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 363
Target Start/End: Original strand, 3659537 - 3659631
Alignment:
| Q |
273 |
atgacatttcgcgacaaattgttcacaccattactcttcaagtc----ctgctctccattttaagtggcaatgcagctgagaacagaagcttctc |
363 |
Q |
| |
|
|||||||||| || |||| | ||||| || ||||||||||| || ||||| ||||||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
3659537 |
atgacatttcacgtcaaaattttcacgcctttactcttcaaatcagttctgctttccattttaagtggcaatggagcagagaacagaatcttctc |
3659631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 36164535 - 36164579
Alignment:
| Q |
237 |
caaatgtaaacaaacaaagccttaaatgataattttatgacattt |
281 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
36164535 |
caaatgtaaacaatcaaagccttacatgataatgttatgacattt |
36164579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University