View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11956_low_7 (Length: 384)
Name: NF11956_low_7
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 20155688 - 20155346
Alignment:
| Q |
11 |
caaaggaagaggctgaagaggtaggatatataggagaaaagttttgtttttgggtatctgaagtatctatacaagaaggatctatacaagaatgaaagga |
110 |
Q |
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| T |
20155688 |
caaaggaagaggctgaagaggtaggatatataggagaaaagttt-gtttttgggtatatgaagtatctatacaagaa---------------tgaaagga |
20155605 |
T |
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| Q |
111 |
ttgaagttaaatggtgcaatgaagcaaaagaatctgggcttccatttgatctgactgtttgggatgcaacaaaagagaaatttttgtacatagaagtgga |
210 |
Q |
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| T |
20155604 |
ttgaagttaaatggtgcaatgaagcaaaagaatctgggcttccatttgatctgactgtttgggatgcaagaaaagagaaatttttgtacatagaagtgaa |
20155505 |
T |
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| Q |
211 |
gtcttcttcagtgtctggtagagacta-nnnnnnnnnaacccctcaggaattaaattcggctcagatttataaggagcggtacatagttatctatgtaag |
309 |
Q |
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| T |
20155504 |
gtcttcttcagtgtctggtagagactattttttttttaacccctcaggaattaaattcggctctgatttataaggagcggtacatagttatctatgtaag |
20155405 |
T |
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| Q |
310 |
tgtcgacttgaataaaaaaccacctaatgagcagtgcagcgtgatcaagatgtacaaag |
368 |
Q |
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| T |
20155404 |
tgtcgacttgaataaaaaaccacctaatgagcagtgcagcgtgatcaagatgtacaaag |
20155346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 20155710 - 20155858
Alignment:
| Q |
85 |
gaaggatctatacaagaatgaaaggattgaagttaaatggtgcaatgaagcaaaagaatctgggcttccatttgatctgactgtttgggatgcaacaaaa |
184 |
Q |
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| T |
20155710 |
gaaggatctatacaa---tgaaaggattgaagttaaatggtgcaatgaagcaaaagaatatgggct-ccatttgatctgactgtttgggatgcaacaaaa |
20155805 |
T |
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| Q |
185 |
gagaaatttttgtacatagaagtggagtcttcttcagtgtctggtagagacta |
237 |
Q |
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| T |
20155806 |
gagaaattcttgtacatagaagtgaagtcttctttagtgtctggtagagacta |
20155858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 20165087 - 20165027
Alignment:
| Q |
12 |
aaaggaagaggctgaagaggtaggatatataggagaaaagttttgtttttgggtatctgaag |
73 |
Q |
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| T |
20165087 |
aaaggaagaggctgaagaggtaggatatataggagaaaag-tttatttttgggtatctgaag |
20165027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 20159669 - 20159609
Alignment:
| Q |
12 |
aaaggaagaggctgaagaggtaggatatataggagaaaagttttgtttttgggtatctgaag |
73 |
Q |
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| T |
20159669 |
aaaggaagagtctgaagaggtaggatatataggagaaaag-tttgttttttggtatctgaag |
20159609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 20162439 - 20162379
Alignment:
| Q |
12 |
aaaggaagaggctgaagaggtaggatatataggagaaaagttttgtttttgggtatctgaag |
73 |
Q |
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| T |
20162439 |
aaaggaagaggctgaagaggtaggatatacaggtgaaaag-tttgtttttgggtatctgaag |
20162379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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