View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11956_low_8 (Length: 342)
Name: NF11956_low_8
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 32368434 - 32368727
Alignment:
| Q |
18 |
accctttacaacgcgaaaattctcctaatcttcgtaataaatactcaattcataacttatgaagttgctgaggagttggcacagtgtagcagtgtatcat |
117 |
Q |
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| T |
32368434 |
accctttacgatgcgaaaatccttctaatcttcgtaataaatactcaatctgtaacttatgaagttgttgacgagttggcacagtgtatgagtgtatcat |
32368533 |
T |
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| Q |
118 |
atggaaaatacaggaagcagtttatg------atggtgatgatgaggacacatacacttgtttctactgataatctcaatgagtaatgtaggtaggtagg |
211 |
Q |
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| T |
32368534 |
atcgaaaatacaggaagcagttgatgttgatgatgatgatgatgaggacacatacacttgtttctgctgataatctcagtgagtaatgtaggtaggtaag |
32368633 |
T |
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| Q |
212 |
taggtgtgttgttggttgc-ttttttattaagtattatgttttgttgtaattgcatgttgtattgcttatgatttgattataggatgtatccaaattt |
308 |
Q |
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| T |
32368634 |
t----gtgttgttggttgtattttttattaagtattatgttttcttgtaattgcatgttgtattgcttatgatttgattataggatgtatccaaattt |
32368727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 32370760 - 32371044
Alignment:
| Q |
18 |
accctttacaacgcgaaaattctcctaatcttcgtaataaatactcaattcataacttatgaagttgctgaggagttggcacagtgtagcagtgtatcat |
117 |
Q |
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| T |
32370760 |
accctttacaacgcgaaaatcctcctaatcttcgtaataaatactcaattcgtaacttatgaaattgctgaggagttggcacagtgtaggagtgtatcat |
32370859 |
T |
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| Q |
118 |
atggaaaatacaggaagcagtttatgatggtgatgatgaggacacatacacttgtttctactgataatctcaatgagtaatgtaggtaggtaggtaggtg |
217 |
Q |
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| T |
32370860 |
atggaaaatacaggaagcagttgaagatgatgattctgatga-------------tgatgatgataatctcagtgagtaatgtag----gtaggtaggta |
32370942 |
T |
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| Q |
218 |
tgttgttggttgcttttttattaagtattatgttttgttgtaattgcatgttgtattgcttatgatttgattataggatgtatccaaatttgtttagtac |
317 |
Q |
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| T |
32370943 |
tgttgttggttgctttttttttaagtattatgttttgttgtaattgcatgttgtattgcttatgatttgattataggatgtatccaaatttgtttagtac |
32371042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 30 - 290
Target Start/End: Original strand, 32370431 - 32370693
Alignment:
| Q |
30 |
gcgaaaattctcctaatcttcgtaataaatactcaattcataacttatgaagttgctgaggagttggcacagtgtagcagtgtatcatatggaaaataca |
129 |
Q |
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| T |
32370431 |
gcgaaaatccttctaatctttgtaataaatactcaattcgtaacttatgaagttgctgaggagttggcacaatgtatgagtgtatcatatcgaaaataca |
32370530 |
T |
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| Q |
130 |
ggaagcagtttatgatggtgat------gatgaggacacatacacttgtttctactgataatctcaatgagtaatgtaggtaggtaggtaggtgtgttgt |
223 |
Q |
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| T |
32370531 |
ggaagcagttgatgatgatgataatgatgatgaggacacatacacttgtttctgctgataatctcagtgagtaatgtag----gtaggtaagtgtgttgt |
32370626 |
T |
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| Q |
224 |
tggttgcttttttattaagtattatgttttgttgtaattgcatgttgtattgcttatgatttgatta |
290 |
Q |
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| T |
32370627 |
tggttgcttttttatcaagtattatatattgttgtaattgcatgttgtattgcttatgatttgatta |
32370693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 32355835 - 32355978
Alignment:
| Q |
143 |
gatggtgatgatgaggacacatacacttgtttctactgataatctcaatgagtaatgtaggtaggtaggtaggtgtgttgttggttgcttttttattaag |
242 |
Q |
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| T |
32355835 |
gatggtgatgatgaggacacagacactt----ctgctgataatctcagtgaataatgtaggtaggt------gtgt-ttgttggttactgttttattaag |
32355923 |
T |
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| Q |
243 |
tattatgttttgttgtaattgcatgttgtattgcttatgatttgattataggatg |
297 |
Q |
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| T |
32355924 |
tattaagttttgttgtaattgcatgttgtattgcttatgatttgattataggatg |
32355978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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