View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11956_low_9 (Length: 320)
Name: NF11956_low_9
Description: NF11956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11956_low_9 |
 | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0770 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0265 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 24191 - 23898
Alignment:
| Q |
9 |
agcagcacagaacactgttgtggagctaaatacagagattgagggccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaagag |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24191 |
agcaacacagaacactgttgtggagctaaatacagagatagagagccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaggag |
24092 |
T |
|
| Q |
109 |
gttcaccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgata |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24091 |
gttcaccctagtaaaaatattcagcatggtctagagctttgggaaagagttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgata |
23992 |
T |
|
| Q |
209 |
tttccttacctgtccttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccatgtgcggggtga |
302 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23991 |
tttccttacctgttcttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccgtgtgcggggtga |
23898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 21808618 - 21808911
Alignment:
| Q |
9 |
agcagcacagaacactgttgtggagctaaatacagagattgagggccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaagag |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21808618 |
agcaacacagaacactgttgtggagctaaatacagagatagagagccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaggag |
21808717 |
T |
|
| Q |
109 |
gttcaccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgata |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21808718 |
gttcaccctagtaaaaatattcagcatggtctagagctttgggaaagagttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgata |
21808817 |
T |
|
| Q |
209 |
tttccttacctgtccttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccatgtgcggggtga |
302 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21808818 |
tttccttacctgttcttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccgtgtgcggggtga |
21808911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 13309920 - 13309862
Alignment:
| Q |
82 |
gaggttgttggtatgcaaaggcaagaggttcaccctagtaaaaatatacagcatggtct |
140 |
Q |
| |
|
||||| ||| |||||||| | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13309920 |
gaggtggttagtatgcaacgacaagaggttcaccctagtaaaaatatccagcatggtct |
13309862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 5743 - 6026
Alignment:
| Q |
19 |
aacactgttgtggagctaaatacagagattgagggccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaagaggttcacccta |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5743 |
aacactgttgtggagcttaatactgagatagagagccctacaaccatgacatctatggatcttgaggttgttggtatgcaaaggcaagaggttcacccta |
5842 |
T |
|
| Q |
119 |
gtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgatatttccttacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5843 |
gtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgatatttctctacc |
5942 |
T |
|
| Q |
219 |
tgtccttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccatgtgcggggtga |
302 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5943 |
tgttcttacacgcaatcaaaaacagaaaattaaggtgcagcaggtactttcaaagcagcctcccaaatcccgtgtgcggggtga |
6026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 104041 - 104324
Alignment:
| Q |
19 |
aacactgttgtggagctaaatacagagattgagggccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaagaggttcacccta |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
104041 |
aacactgttgtggagcttaatactgagatagagagccctacaaccatgacatctatggatcttgaggttgttggtatgcaaaggcaagaggttcacccta |
104140 |
T |
|
| Q |
119 |
gtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgatatttccttacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
104141 |
gtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgatatttctctacc |
104240 |
T |
|
| Q |
219 |
tgtccttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccatgtgcggggtga |
302 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
104241 |
tgttcttacacgcaatcaaaaacagaaaattaaggtgcagcaggtactttcaaagcagcctcccaaatcccgtgtgcggggtga |
104324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 302
Target Start/End: Complemental strand, 1929234 - 1928946
Alignment:
| Q |
14 |
cacagaacactgttgtggagctaaatacagagattgagggccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaagaggttca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | || |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1929234 |
cacagaacactgttgtggagctaaatacagagatagcgagctctacggccatgacatctaaggatcttgaggttgtcggtatgcaaaggcaagaggttca |
1929135 |
T |
|
| Q |
114 |
ccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgatatttcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
1929134 |
ccctagtaaaaatatacagcatggtctagagctttgggaaagagttcgggagtatgatgcacgttcagcagcggaagcagctaactcctctgatatttcc |
1929035 |
T |
|
| Q |
214 |
ttacctgtccttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccatgtgcggggtga |
302 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1929034 |
ctacctgttcttacacgcaatcaaaaacataaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccgtgtgcggggtga |
1928946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 11485744 - 11485665
Alignment:
| Q |
95 |
tgcaaaggcaagaggttcaccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgca |
174 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||| || || | ||||| || || || |||||||||||| |
|
|
| T |
11485744 |
tgcaaaggcaagaggttcaccctagtaagaatatccagcatggcctatagttatgggagagagtccgagagtatgatgca |
11485665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 34511603 - 34511661
Alignment:
| Q |
82 |
gaggttgttggtatgcaaaggcaagaggttcaccctagtaaaaatatacagcatggtct |
140 |
Q |
| |
|
||||| ||| |||||||| | ||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
34511603 |
gaggtggttagtatgcaacgacaagagggtcaccctagaaaaaatatccagcatggtct |
34511661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 21898685 - 21898392
Alignment:
| Q |
9 |
agcagcacagaacactgttgtggagctaaatacagagattgagggccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaagag |
108 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
21898685 |
agcaacacagaacactgttgtgcagataaatacagagatggagggccctacggccatgacaactatggaacttgaggttgttggtatgcaaaggcaggag |
21898586 |
T |
|
| Q |
109 |
gttcaccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| ||| |
|
|
| T |
21898585 |
gttcaccctagtaaaaatatacagcatggtctagagctttgggaaagagttcgggagtatgatgcacgttcagcggtggaagcagctaaatcatctaata |
21898486 |
T |
|
| Q |
209 |
tttccttacctgtccttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccatgtgcggggtga |
302 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21898485 |
tttccctacctgttcttacacgcaatcaaaaacagaaaattaaggtgcaacgggcactttcaaagcagcctcccaaatcccgtgtgcggggtga |
21898392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 60325 - 60032
Alignment:
| Q |
9 |
agcagcacagaacactgttgtggagctaaatacagagattgagggccctacggccatgacatctatggatcttgaggttgttggtatgcaaaggcaagag |
108 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||| ||| |
|
|
| T |
60325 |
agcatcacagaacactattgtggagctaaatacagagattgagggccctacggtcatgacacctatggaacttgaggttgttggtatgcaacggcatgag |
60226 |
T |
|
| Q |
109 |
gttcaccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcggcggaagcagctaactcatctgata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
60225 |
gttcaccctagtaaaaatatacagcatggtctagagctttgggaaagagttcgggagtatgatgcacgttcagcagcggaagcagctaattcatctgata |
60126 |
T |
|
| Q |
209 |
tttccttacctgtccttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaaatcccatgtgcggggtga |
302 |
Q |
| |
|
||||| ||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
60125 |
tttccctacctgttcttacaagaaatcaaaagcagaaaattaaggtgcaacaggtactttcaaagcagcctcctaaatcccgtgcgcggggtga |
60032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 289
Target Start/End: Original strand, 11558 - 11762
Alignment:
| Q |
85 |
gttgttggtatgcaaaggcaagaggttcaccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgcacgttcagcgg |
184 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||| || |||||||| |||||||| ||||| |||||||| || ||||| ||||||||||| ||||| | |
|
|
| T |
11558 |
gttgttggtatgcaacgacaagaggtccaccctagcaagaatatacaacatggtcttgagctgtgggaaagagtgcgggaatatgatgcacgctcagcag |
11657 |
T |
|
| Q |
185 |
cggaagcagctaactcatctgatatttccttacctgtccttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagcagcctcccaa |
284 |
Q |
| |
|
| ||||||||||| |||||| |||| ||| ||||| | |||||| | ||||||||||||||||||||||||||||| || ||||||||||||||| | || |
|
|
| T |
11658 |
cagaagcagctaaatcatcttatatatccctacctattcttacaagaaatcaaaaacagaaaattaaggtgcaacaagtcctttcaaagcagcctactaa |
11757 |
T |
|
| Q |
285 |
atccc |
289 |
Q |
| |
|
||||| |
|
|
| T |
11758 |
atccc |
11762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 20941329 - 20941259
Alignment:
| Q |
103 |
caagaggttcaccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgc |
173 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
20941329 |
caagaggttcaccctagtaaaaacattcagcatggccttgagctatgggaaagggttcgtgagtatgatgc |
20941259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 25975528 - 25975458
Alignment:
| Q |
103 |
caagaggttcaccctagtaaaaatatacagcatggtctggagctttgggaaagggttcgggagtatgatgc |
173 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| || ||| | |||||||||||||| ||||||||||| |
|
|
| T |
25975528 |
caagaggttcaccctagtaaaaacattcaacatggccttgagttatgggaaagggttcgtgagtatgatgc |
25975458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 6745 - 6797
Alignment:
| Q |
223 |
cttacacgcaatcaaaaacagaaaattaaggtgcaacaggtactttcaaagca |
275 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| |||||||| || |||||||| |
|
|
| T |
6745 |
cttacacgtaatcagaaacagaaaatcaaggttcaacaggttctatcaaagca |
6797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 39318 - 39366
Alignment:
| Q |
95 |
tgcaaaggcaagaggttcaccctagtaaaaatatacagcatggtctgga |
143 |
Q |
| |
|
||||||| ||||||||||| || || || |||||||||||||||||||| |
|
|
| T |
39318 |
tgcaaagacaagaggttcatccaagcaagaatatacagcatggtctgga |
39366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 159461 - 159413
Alignment:
| Q |
95 |
tgcaaaggcaagaggttcaccctagtaaaaatatacagcatggtctgga |
143 |
Q |
| |
|
||||||| ||||||||||| || || || |||||||||||||||||||| |
|
|
| T |
159461 |
tgcaaagacaagaggttcatccaagcaagaatatacagcatggtctgga |
159413 |
T |
|
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