View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_high_10 (Length: 263)
Name: NF11957_high_10
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_high_10 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 8212733 - 8212483
Alignment:
| Q |
8 |
aagcagagaagatagctagaaataagaccaaaag-aaaaagtgtacatgtatgaatgaaattaaaaaccatcatcatcatcagaaattcataaaataata |
106 |
Q |
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| T |
8212733 |
aagcagagaagatagctagaaataagaccaaaaggaaaaagtgtacatgtatgaatgaaattaaaaaccatcataatca---gaaattcataaaataa-- |
8212639 |
T |
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| Q |
107 |
aactaaggaataattacactactacattcaaaagatgatttttgtgttccaccttgacnnnnnnngaaaacatgaggacacctaaacaaacaattatcaa |
206 |
Q |
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| T |
8212638 |
-actaaggaataattacactactacattcaaaagatgatttttgtgttccaccttgacaaaaaaagaaaacatgaggacacctaaacaaacaattatcaa |
8212540 |
T |
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| Q |
207 |
ctaaactcacattagcagaatcttgtttaagaacaagcaaaggacgaggtatcccac |
263 |
Q |
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| T |
8212539 |
ctaaactgacattagcagaatcttgtttaagaacaagcaaaggacgaggtatcccac |
8212483 |
T |
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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 525 - 553
Alignment:
| Q |
24 |
tagaaataagaccaaaagaaaaagtgtac |
52 |
Q |
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| T |
525 |
tagaaataagaccaaaagaaaaagtgtac |
553 |
T |
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