View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_high_15 (Length: 248)
Name: NF11957_high_15
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 4402380 - 4402520
Alignment:
| Q |
19 |
atccgtaattt-gagtttttattccaggtccatgtttaatgcgctttcatgagatgcacctatgctcatttgagatatgtattaacaattaaccttctat |
117 |
Q |
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| T |
4402380 |
atccgtaattttgagtttttattccaggtccatgtttaatgcgctttcatgagatgcacctatgctcatttgagatatgtattaacaattaaccttctat |
4402479 |
T |
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| Q |
118 |
tgatttttggtctcaaccttctcgttctcatagaaaaagac |
158 |
Q |
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| T |
4402480 |
tgatttttggtctcaaccttctcgttctcatagaaaaagac |
4402520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 4402686 - 4402748
Alignment:
| Q |
162 |
gcaaaattacatatttgattccttaatttattttgtggttttaatttgatttcataactattt |
224 |
Q |
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| T |
4402686 |
gcaaaattacatatttgattccttaacttattttgtggttttaatttgatttcataactattt |
4402748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 4402745 - 4402783
Alignment:
| Q |
210 |
atttcataactatttgtcatgttttggtcttataacctt |
248 |
Q |
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| T |
4402745 |
atttcataactatttgtcatgttttggtcttataacctt |
4402783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 37508722 - 37508751
Alignment:
| Q |
165 |
aaattacatatttgattccttaatttattt |
194 |
Q |
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| T |
37508722 |
aaattacatatttgattccttaatttattt |
37508751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 12364199 - 12364235
Alignment:
| Q |
175 |
tttgattccttaatttattttgtggttttaatttgat |
211 |
Q |
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| T |
12364199 |
tttgattccttaatttattttctgtttttaatttgat |
12364235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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