View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_high_17 (Length: 236)
Name: NF11957_high_17
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 6819118 - 6818920
Alignment:
| Q |
30 |
ttcaagattaagctcgtccagtaattcacattaacaagtgagataattc--atgccttaacattttcctagtaagtgatgataacaggtgtttgtgtc-- |
125 |
Q |
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| T |
6819118 |
ttcaagattaagctcgtccagtaattcacattaacaagtgagataattctcatgccttaacattttcctagtaagtgatgataacaggtgtttgtgtcgt |
6819019 |
T |
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| Q |
126 |
-agtgtcaggttcgtttgttgatgaggacaaggaagaaatatatgaccatattaacgaagcacacactcagacttctcatcactatccattgaactatg |
223 |
Q |
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| T |
6819018 |
caatgtcaggttcaatagttgatgaggacaaggaagaaagatatgaccatattaacgaagcatacactcagacttctcgtcactatccattgaactatg |
6818920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 6810832 - 6810722
Alignment:
| Q |
113 |
aggtgtttgtgtcagtgtcaggttcgtttgttgatgaggacaaggaagaaatatatgaccatattaacgaagcacacactcagacttctcatcactatcc |
212 |
Q |
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| T |
6810832 |
aggtgcttctgtcagtgtcaggttcgtttgttgatgacgacaaggaagaaagatatgaccatattaacgaagcatacactcagacttctcgtcactatcc |
6810733 |
T |
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| Q |
213 |
attgaactatg |
223 |
Q |
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| T |
6810732 |
attgaactatg |
6810722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 6833651 - 6833479
Alignment:
| Q |
51 |
taattcacattaacaagtgagataattcatgccttaacattttcctagtaag--tgat----gataacaggtgtttgtgtcagtgtcaggttcgtttgtt |
144 |
Q |
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| T |
6833651 |
taattcacaataacaagtgacttaatttatgcctaaacattttctttgtaatactgataagtgataaaaggtgtttgtgccaatgtcaggttcaattgtt |
6833552 |
T |
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| Q |
145 |
gatgaggacaaggaagaaatatatgaccatattaacgaagcacacactcagacttctcatcactatccattgaactatg |
223 |
Q |
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| T |
6833551 |
gatgaggacaaggaagaaagatatgac---att---caagcacacacacagacctctcatcactatccactgaactatg |
6833479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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