View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11957_high_2 (Length: 519)

Name: NF11957_high_2
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11957_high_2
NF11957_high_2
[»] chr8 (2 HSPs)
chr8 (1-351)||(10393963-10394313)
chr8 (391-502)||(10395859-10395970)
[»] chr7 (1 HSPs)
chr7 (8-54)||(18773771-18773816)
[»] chr4 (2 HSPs)
chr4 (8-54)||(16612640-16612686)
chr4 (8-48)||(1701615-1701655)
[»] chr1 (1 HSPs)
chr1 (8-54)||(45652134-45652180)
[»] chr3 (1 HSPs)
chr3 (10-54)||(53683472-53683516)
[»] chr2 (2 HSPs)
chr2 (6-54)||(2429017-2429064)
chr2 (8-48)||(3113742-3113781)


Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 10393963 - 10394313
Alignment:
Q  1 accttgaaccttacatattttatgcatttgtccttatcaactgaactatgctcagaggacaatgataattaaactaatctcggtcattttcataatgaag 100  Q
    ||||||||| |||||||||||||  ||||||||||| |||||||| |||| |||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  10393963 accttgaacattacatattttatatatttgtccttaccaactgaattatgttcagaggacagtaataattaaactaatctcggtcattttcataacgaag 10394062  T
Q  101 accaattaattcctctattatcataataaaatcgtgagatactaatttctccactatataaaactgtttaaagattaatttagatatcatattttgttat 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10394063 accaattaattcttctattatcataataaaatcgtgagatactaatttctccactatataaaactgtttaaagattaatttagatatcatattttgttat 10394162  T
Q  201 aattgaattgggcaacaaccaactgtgaagactaaattaaatatttattctggtttaaaagagtacaaatgttcaatttgtgtttgacataacacactga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10394163 aattgaattgggcaacaaccaactgtgaagactaaattaaatatttattctggtttaaaagagtacaaatgttcaatttgtgtttgacataacacactga 10394262  T
Q  301 taaatacgttaatgtgaaagagcgatgagtcaccattttcttgatataatg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10394263 taaatacgttaatgtgaaagagcgatgagtcaccattttcttgatataatg 10394313  T

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Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 391 - 502
Target Start/End: Original strand, 10395859 - 10395970
Alignment:
Q  391 ccatcgataaggtgagcatcactgattagatcattatgttgggccaagagcaattatagaagtgagttgaataccacttcatcacctaagacctcaagac 490  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10395859 ccatccataaggtgagcatcactgattagatcattatgttgggctaagagcaattatacaagtgagttgaataccacttcatcacctaagacctcaagac 10395958  T
Q  491 atttctcctgtt 502  Q
    ||||||||||||    
T  10395959 atttctcctgtt 10395970  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 18773771 - 18773816
Alignment:
Q  8 accttacatattttatgcatttgtccttatcaactgaactatgctca 54  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  18773771 accttacatattttatgca-ttgtccatatcaactgaactgtgctca 18773816  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 16612686 - 16612640
Alignment:
Q  8 accttacatattttatgcatttgtccttatcaactgaactatgctca 54  Q
    ||||| ||||| || |||||||||||||||||||||||||| |||||    
T  16612686 accttgcatatattctgcatttgtccttatcaactgaactaagctca 16612640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 1701655 - 1701615
Alignment:
Q  8 accttacatattttatgcatttgtccttatcaactgaacta 48  Q
    ||||| ||||| |||||||||| ||||||||||||||||||    
T  1701655 accttgcatatattatgcatttatccttatcaactgaacta 1701615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 45652134 - 45652180
Alignment:
Q  8 accttacatattttatgcatttgtccttatcaactgaactatgctca 54  Q
    ||||||||||| |||||||||||||||||| || ||||||| |||||    
T  45652134 accttacatatattatgcatttgtccttattaattgaactaagctca 45652180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 53683472 - 53683516
Alignment:
Q  10 cttacatattttatgcatttgtccttatcaactgaactatgctca 54  Q
    ||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  53683472 cttacatatattatgtatttgtccttatcaactgagctaagctca 53683516  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 2429064 - 2429017
Alignment:
Q  6 gaaccttacatattttatgcatttgtccttatcaactgaactatgctca 54  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||| |||||    
T  2429064 gaaccttacatatattatgcatt-gtccttaccaactgaactaagctca 2429017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 3113742 - 3113781
Alignment:
Q  8 accttacatattttatgcatttgtccttatcaactgaacta 48  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  3113742 accttgcatattttatgcatt-gtccttatcaactgaacta 3113781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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