View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_high_20 (Length: 221)
Name: NF11957_high_20
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 25698144 - 25698341
Alignment:
| Q |
1 |
ataaagtatggagcaatatcaacgaatcagctcaaacaatttgtgaacgagcaagttctctccttactagttggttgaatgtttaagttatgaggagtca |
100 |
Q |
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| T |
25698144 |
ataaagtatggagcaatatcaacgaatcagctcaaacaatttgtgaacgagcaagttctctccttactagttggttgaatgtccaagttatgaggagtca |
25698243 |
T |
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| Q |
101 |
aactataaagcaatcaaacactaatggtaagatgcaatgacgtaaaccaagtccttgaagatacaaatgtaaggtaaatgccacattttctcatgctc |
198 |
Q |
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| T |
25698244 |
aactataaagcaatcaaacactaatggtaagatgcaatgacgtaaaccgagtccttgaagatacaagtgtaaggtaaatgccacattttctcatgctc |
25698341 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 35208291 - 35208136
Alignment:
| Q |
16 |
atatcaacgaatcagctcaaacaatttgtgaacgagcaagttctctccttactagttggttgaatgtttaagttatgaggagtcaaactataaagcaatc |
115 |
Q |
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|||| |||||||||||| ||||||||||||||| || || | ||| |||| |||| ||||||||| ||| ||||| | | |||||||| ||||||| |
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| T |
35208291 |
atattaacgaatcagcttaaacaatttgtgaacaagaaaactttcttcttaatagtcggttgaatgcctaa-ttatgcgtaatcaaactactgagcaatc |
35208193 |
T |
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| Q |
116 |
aaacactaatggtaagatgcaatgacgtaaaccaagtccttgaagatacaaatgtaa |
172 |
Q |
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|| ||||||||| | |||||||| | ||||| |||||| | |||||||||||| |
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| T |
35208192 |
gaatactaatggtgaaatgcaatggcataaactgagtcctcacatatacaaatgtaa |
35208136 |
T |
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