View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_high_5 (Length: 411)
Name: NF11957_high_5
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 36632852 - 36632454
Alignment:
| Q |
1 |
tccttaaccgatgaaaggacactaagtagagagtgatgtcttttatgcatgcatgcttatcgcaaaccaagttggttgctaatctgaagtctaaacatga |
100 |
Q |
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| T |
36632852 |
tccttaatcgatgaaaggacactaagcagagagtgatgtcttttatgcatgcatgcttattgcacaccaagttggttgctaatctgaagtctaaacatga |
36632753 |
T |
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| Q |
101 |
aagaaataaatnnnnnnnnggttggttctgtcctataagnnnnnnnnncatgatatgatgcacgatttgcgtgcattttgtcttgacttgcaaatccatg |
200 |
Q |
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| T |
36632752 |
aagaaagaaataaaaaaaaggttggttctgtcctataagaaaaaaaa-catgatatgatgcacgatttgcgtgcattttgtcttaacttgcaaatccacg |
36632654 |
T |
|
| Q |
201 |
agattgcatattgcttgcttcaccgtccttaattgtctgtctcccccgtgaaccattcgaatttaggcaattatata----actcttctgctaagattct |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36632653 |
agattgcatattgcttgcttcaccgtccttaattgtctgtctcccccgtgaaccattcgaatttaggcaattatataaactactcttctgctaagattct |
36632554 |
T |
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| Q |
297 |
tcctcgtttatcttctattttattattaattttgttaacacatgagccacaatgcatagataataattaatgtcaaacgaaaagacgcattaagatattt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36632553 |
tcctcgtttatcttctattttattattaattttgttaacacatgagccacaatgcatagataataattaatgtcaaacgaaaagacgcattaagatattt |
36632454 |
T |
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