View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11957_high_6 (Length: 403)

Name: NF11957_high_6
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11957_high_6
NF11957_high_6
[»] chr6 (11 HSPs)
chr6 (98-330)||(23071720-23071948)
chr6 (326-387)||(23072081-23072142)
chr6 (61-100)||(22564564-22564603)
chr6 (44-100)||(21036956-21037012)
chr6 (61-100)||(1636676-1636715)
chr6 (45-100)||(14641659-14641714)
chr6 (61-100)||(21687144-21687183)
chr6 (45-96)||(21760426-21760477)
chr6 (67-102)||(24320649-24320684)
chr6 (66-100)||(10505194-10505228)
chr6 (61-98)||(9848206-9848243)
[»] chr8 (5 HSPs)
chr8 (45-102)||(24583184-24583241)
chr8 (45-102)||(26888513-26888570)
chr8 (61-101)||(15058518-15058558)
chr8 (45-100)||(13313286-13313341)
chr8 (70-100)||(28318558-28318588)
[»] chr3 (11 HSPs)
chr3 (45-102)||(34276450-34276507)
chr3 (45-100)||(19912607-19912662)
chr3 (44-100)||(12771217-12771273)
chr3 (61-100)||(16242209-16242248)
chr3 (65-100)||(25530746-25530781)
chr3 (46-100)||(20891660-20891714)
chr3 (61-100)||(12517333-12517372)
chr3 (61-100)||(18535813-18535852)
chr3 (62-100)||(22470417-22470455)
chr3 (67-99)||(8765723-8765755)
chr3 (67-99)||(8770613-8770645)
[»] chr5 (10 HSPs)
chr5 (45-100)||(29987984-29988039)
chr5 (61-100)||(34488900-34488939)
chr5 (46-102)||(24162024-24162080)
chr5 (61-100)||(15691311-15691350)
chr5 (67-102)||(25400751-25400786)
chr5 (61-100)||(28254934-28254973)
chr5 (65-100)||(29989017-29989052)
chr5 (66-100)||(20102908-20102942)
chr5 (47-100)||(24263765-24263818)
chr5 (49-102)||(26348473-26348526)
[»] chr2 (6 HSPs)
chr2 (45-102)||(28918215-28918272)
chr2 (44-100)||(17351004-17351060)
chr2 (52-100)||(27540280-27540328)
chr2 (45-100)||(27907537-27907592)
chr2 (67-100)||(23010058-23010091)
chr2 (149-222)||(29987721-29987793)
[»] chr7 (13 HSPs)
chr7 (63-99)||(17887746-17887782)
chr7 (65-100)||(2505890-2505925)
chr7 (45-100)||(18986759-18986814)
chr7 (45-100)||(19001387-19001442)
chr7 (61-100)||(21707352-21707391)
chr7 (46-100)||(4450699-4450753)
chr7 (45-100)||(5236881-5236936)
chr7 (45-100)||(8977485-8977540)
chr7 (61-96)||(14195791-14195826)
chr7 (45-100)||(26249090-26249145)
chr7 (62-100)||(10332448-10332486)
chr7 (72-100)||(1767430-1767458)
chr7 (44-100)||(8052444-8052499)
[»] chr4 (9 HSPs)
chr4 (45-100)||(8968086-8968141)
chr4 (61-100)||(25025149-25025188)
chr4 (46-100)||(9849722-9849776)
chr4 (62-100)||(12836085-12836123)
chr4 (63-100)||(19335240-19335277)
chr4 (63-100)||(19666964-19667001)
chr4 (45-100)||(7583819-7583874)
chr4 (45-100)||(15166495-15166550)
chr4 (67-100)||(8928328-8928361)
[»] chr1 (13 HSPs)
chr1 (61-100)||(11845236-11845275)
chr1 (46-100)||(26647372-26647426)
chr1 (63-100)||(21536921-21536958)
chr1 (45-101)||(16180744-16180800)
chr1 (45-100)||(729163-729218)
chr1 (61-100)||(14235299-14235338)
chr1 (45-100)||(15542323-15542378)
chr1 (61-100)||(21663105-21663144)
chr1 (61-100)||(22621836-22621875)
chr1 (61-100)||(27973346-27973385)
chr1 (46-100)||(24901237-24901291)
chr1 (65-98)||(17016831-17016864)
chr1 (68-100)||(24464664-24464696)
[»] scaffold0386 (1 HSPs)
scaffold0386 (61-100)||(4887-4926)
[»] scaffold0032 (1 HSPs)
scaffold0032 (61-100)||(92843-92882)
[»] scaffold0059 (1 HSPs)
scaffold0059 (65-102)||(63961-63998)
[»] scaffold0555 (1 HSPs)
scaffold0555 (44-100)||(6479-6535)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 98 - 330
Target Start/End: Original strand, 23071720 - 23071948
Alignment:
Q  98 taaaagtgtatctattacgatttttcttaactatttctatacaagatttatacaataaaaaagtgtgtataagattacaacaatatatgtacacgttaga 197  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||| || ||||||||||||||| | |||||||||||||||||    
T  23071720 taaaagtgtatctattacgatttttattgactatttctatacaagatatatactataaaaatgtatgtataagattacaatagtatatgtacacgttaga 23071819  T
Q  198 ctatgtttgtatttatgtgaatttgaacaaatgtagtcatagtcaataaccttcttcaaacaaattaggtcctttaagtagagcttaagtttgatgacca 297  Q
    |||||| | ||| ||||||| |||| ||| ||||| ||||||||||||||   ||||| ||| | |||||||||||| |||||||| || |||||||||     
T  23071820 ctatgtgtatatgtatgtgagtttgcacatatgtaatcatagtcaataac---cttcatacagactaggtcctttaaatagagctt-agcttgatgaccg 23071915  T
Q  298 ttgctcaagaatcagttgtccttgaatgcatgc 330  Q
    ||||| |||||||| ||||||||||||||||||    
T  23071916 ttgctgaagaatcacttgtccttgaatgcatgc 23071948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 23072081 - 23072142
Alignment:
Q  326 catgcatcattaatgaattcttgagtcaatgctcgtatggaggaactcaatcaagaggttat 387  Q
    |||||||| |||| |||||||||||||||||  ||| | |||||||||||||||||||||||    
T  23072081 catgcatccttaaggaattcttgagtcaatgtccgtgtagaggaactcaatcaagaggttat 23072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 22564603 - 22564564
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  22564603 ctactaaaaatgactgaaaaacatgctaagaataacgtaa 22564564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 21036956 - 21037012
Alignment:
Q  44 atttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||||||||| | ||||||||||| ||||||||| ||| ||||||| ||||||    
T  21036956 atttttgttgctaaaacctactaaaaataactgaaaaacatgataagaatgacgtaa 21037012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 1636676 - 1636715
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  1636676 ctactaaaaataactgaaaaacatgctaagaataacgtaa 1636715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 14641659 - 14641714
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||| ||||||||| ||||||||||||||||||    
T  14641659 tttttgctgctaaaacctactgaaaataactgaaaaacatgctaagaataacgtaa 14641714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 21687183 - 21687144
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  21687183 ctactaaaattgactgaaaaacatgctaagaataacgtaa 21687144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 21760477 - 21760426
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataac 96  Q
    |||||| ||||||  |||| | ||||||||||||||||||||||||||||||    
T  21760477 tttttgctgctaaattctattgaaaatgactgaaaaatatgctaagaataac 21760426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 24320649 - 24320684
Alignment:
Q  67 aaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24320649 aaaatgactgaaaaatatgctaaaaataacgtaaaa 24320684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 10505194 - 10505228
Alignment:
Q  66 aaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||||||| |||||||||    
T  10505194 aaaaatgactgaaaaatatgctaagtataacgtaa 10505228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 9848206 - 9848243
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgt 98  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  9848206 ctactaaaaatgactgaaaaacatgttaagaataacgt 9848243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 24583241 - 24583184
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    |||||| |||||| ||||||||||||||||||||||| |||||||||||||| |||||    
T  24583241 tttttgctgctaaaatctactaaaaatgactgaaaaacatgctaagaataacataaaa 24583184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 26888513 - 26888570
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    ||||||||||||| | ||||||||||| | ||||||||||||||| ||||||||||||    
T  26888513 tttttgttgctaaaacctactaaaaataaatgaaaaatatgctaaaaataacgtaaaa 26888570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 15058558 - 15058518
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaaa 101  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  15058558 ctactaaaaatgactaaaaaacatgctaagaataacgtaaa 15058518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 13313341 - 13313286
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||| | ||||||||||||||| ||||||||||||||||||    
T  13313341 tttttgctgctaaaacctattgaaaatgactgaaaaacatgctaagaataacgtaa 13313286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 28318558 - 28318588
Alignment:
Q  70 atgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||||||||||||||||||||||||||    
T  28318558 atgactgaaaaatatgctaagaataacgtaa 28318588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 34276507 - 34276450
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    |||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||||    
T  34276507 tttttgctgctaaaacctactgaaaatgactgaaaaatatgctaagaataacgtaaaa 34276450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 19912607 - 19912662
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  19912607 tttttgctgctaaaacctactgaaaatgactgaaaaatatgctaagaataacgtaa 19912662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 12771273 - 12771217
Alignment:
Q  44 atttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||| |||||| || |||| ||||||||||||||| ||||||||||||||||||    
T  12771273 atttttgctgctaaaatatactgaaaatgactgaaaaacatgctaagaataacgtaa 12771217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 16242248 - 16242209
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  16242248 ctactaaaaatgagtgaaaaatatgctaagaataacgtaa 16242209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 25530781 - 25530746
Alignment:
Q  65 taaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||    
T  25530781 taaaaatgactgaaaaatatgctaagaataacgtaa 25530746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 20891714 - 20891660
Alignment:
Q  46 ttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||| ||| | ||||| |||| |||||||||||||||||||||||||||||    
T  20891714 ttttgttggtaaaacctactgaaaacgactgaaaaatatgctaagaataacgtaa 20891660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 12517333 - 12517372
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  12517333 ctactgaaaatgactgaaaaagatgctaagaataacgtaa 12517372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 18535813 - 18535852
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  18535813 ctactaaaattgactgaaaaacatgctaagaataacgtaa 18535852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 22470455 - 22470417
Alignment:
Q  62 tactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  22470455 tactgaaaatgactgaaaaacatgctaagaataacgtaa 22470417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 8765723 - 8765755
Alignment:
Q  67 aaaatgactgaaaaatatgctaagaataacgta 99  Q
    ||||||||||||||| |||||||||||||||||    
T  8765723 aaaatgactgaaaaacatgctaagaataacgta 8765755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 8770613 - 8770645
Alignment:
Q  67 aaaatgactgaaaaatatgctaagaataacgta 99  Q
    ||||||||||||||| |||||||||||||||||    
T  8770613 aaaatgactgaaaaacatgctaagaataacgta 8770645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 29987984 - 29988039
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  29987984 tttttgctgctaaaatctactaaaaatgactgaaaaacatgctaaaaataacgtaa 29988039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 34488900 - 34488939
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  34488900 ctactaaaaatgactgaaaaacatgctaagaataacgtaa 34488939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 24162080 - 24162024
Alignment:
Q  46 ttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    ||||| || ||| ||||| | ||||||||||||||| ||||||||||||||||||||    
T  24162080 ttttgctggtaaaatctattgaaaatgactgaaaaacatgctaagaataacgtaaaa 24162024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 15691311 - 15691350
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  15691311 ctactgaaaatgactaaaaaatatgctaagaataacgtaa 15691350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 25400786 - 25400751
Alignment:
Q  67 aaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    ||||||||||||||| ||||||||||||||||||||    
T  25400786 aaaatgactgaaaaacatgctaagaataacgtaaaa 25400751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 28254934 - 28254973
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  28254934 ctactgaaaatgactgaaaaatatgttaagaataacgtaa 28254973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 29989052 - 29989017
Alignment:
Q  65 taaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29989052 taaaaattactgaaaaatatgctaagaataacgtaa 29989017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 20102942 - 20102908
Alignment:
Q  66 aaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||||||||||||||||||| ||||||||||    
T  20102942 aaaaatgactgaaaaatatgctaaaaataacgtaa 20102908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 24263818 - 24263765
Alignment:
Q  47 tttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||| ||| | |||||||||  |||||||||| ||||||||||||||||||    
T  24263818 tttgttggtaaaacctactaaaatagactgaaaaacatgctaagaataacgtaa 24263765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 26348473 - 26348526
Alignment:
Q  49 tgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    ||||| ||| |||||||  |||||||||||||| || |||||||||||||||||    
T  26348473 tgttggtaaaatctactggaaatgactgaaaaacatactaagaataacgtaaaa 26348526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 28918215 - 28918272
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    ||||||| ||||| | ||||| ||||||||||||||| ||||||||||||||||||||    
T  28918215 tttttgtagctaaaacctactgaaaatgactgaaaaacatgctaagaataacgtaaaa 28918272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 17351004 - 17351060
Alignment:
Q  44 atttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||||||||| | ||||| ||||| ||||||||||||| ||||||||||||||    
T  17351004 atttttgttgctaaaacctactgaaaataactgaaaaatatgttaagaataacgtaa 17351060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 27540328 - 27540280
Alignment:
Q  52 tgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| | ||||| ||||||||||||||||||||||||| ||||||||    
T  27540328 tgctaaaacctactgaaaatgactgaaaaatatgctaagagtaacgtaa 27540280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 27907592 - 27907537
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||| |  |||| ||||||||||||||| ||||||||||||| ||||    
T  27907592 tttttgttgctaaaacttactgaaaatgactgaaaaacatgctaagaataatgtaa 27907537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 23010091 - 23010058
Alignment:
Q  67 aaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||| ||||||||||||||||||    
T  23010091 aaaatgactgaaaaacatgctaagaataacgtaa 23010058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 29987793 - 29987721
Alignment:
Q  149 acaataaaaaagtgtgtataagattacaacaatatatgtacacgttagactatgtttgtatttatgtgaatttg 222  Q
    |||||||| |||| ||||||  ||||||| | |||||| ||| |||||||| ||||||||| ||||||||||||    
T  29987793 acaataaagaagtatgtatataattacaatagtatatgaacatgttagact-tgtttgtatgtatgtgaatttg 29987721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 17887782 - 17887746
Alignment:
Q  63 actaaaaatgactgaaaaatatgctaagaataacgta 99  Q
    |||||||||||||||||||||||||||||||||||||    
T  17887782 actaaaaatgactgaaaaatatgctaagaataacgta 17887746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 2505890 - 2505925
Alignment:
Q  65 taaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||    
T  2505890 taaaaatgactgaaaaatatgctaagaataacgtaa 2505925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 18986814 - 18986759
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| ||||||| ||| ||||||||||| ||||||||||||||||||    
T  18986814 tttttgctgctaaaatctactgaaattgactgaaaaacatgctaagaataacgtaa 18986759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 19001442 - 19001387
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| ||||||| ||| ||||||||||| ||||||||||||||||||    
T  19001442 tttttgctgctaaaatctactgaaattgactgaaaaacatgctaagaataacgtaa 19001387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 21707391 - 21707352
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  21707391 ctactaaaaatgattgaaaaatatgctaagaataacgtaa 21707352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 4450699 - 4450753
Alignment:
Q  46 ttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||||||| | ||||| |||||||||| |||| ||||||||||||||||||    
T  4450699 ttttgttgctaaaacctactgaaaatgactggaaaacatgctaagaataacgtaa 4450753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 5236936 - 5236881
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||| ||||||||| ||||||||||||||||||    
T  5236936 tttttgctgctaaaacctactgaaaataactgaaaaacatgctaagaataacgtaa 5236881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 8977540 - 8977485
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||||| ||||||| ||||||||||||||||||    
T  8977540 tttttgctgctaaaacctactgaaaatgattgaaaaagatgctaagaataacgtaa 8977485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 14195791 - 14195826
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataac 96  Q
    ||||||||||||||||||||| ||||||||||||||    
T  14195791 ctactaaaaatgactgaaaaacatgctaagaataac 14195826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 26249145 - 26249090
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||||||||||||| |||||| |||||||||||    
T  26249145 tttttgctgctaaaacctactgaaaatgactgaaaaacatgctatgaataacgtaa 26249090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 10332448 - 10332486
Alignment:
Q  62 tactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  10332448 tactgaaaatgactgaaaaacatgctaagaataacgtaa 10332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 1767430 - 1767458
Alignment:
Q  72 gactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||||||||||||||||||||||||    
T  1767430 gactgaaaaatatgctaagaataacgtaa 1767458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 8052499 - 8052444
Alignment:
Q  44 atttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||| |||||| | ||||| |||||||||| |||| ||||||||||||||||||    
T  8052499 atttttgctgctaaaacctactgaaaatgactg-aaaacatgctaagaataacgtaa 8052444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 8968141 - 8968086
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||||||||||||| ||||||||||||||||||    
T  8968141 tttttgctgctaaaacctacttaaaatgactgaaaaacatgctaagaataacgtaa 8968086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 25025149 - 25025188
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  25025149 ctactaaaaatgactgaaaaacatgctaagaataacgtaa 25025188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 9849776 - 9849722
Alignment:
Q  46 ttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||| ||| | ||||||||||||||||||||| || |||||||||||||||    
T  9849776 ttttgttggtaaaacctactaaaaatgactgaaaaacatactaagaataacgtaa 9849722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 12836123 - 12836085
Alignment:
Q  62 tactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  12836123 tactaaaaatgactgaaaaacatgctaagaataacgtaa 12836085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 19335277 - 19335240
Alignment:
Q  63 actaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  19335277 actaaaaatgactaaaaaatatgctaagaataacgtaa 19335240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 19667001 - 19666964
Alignment:
Q  63 actaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19667001 actaaaagtgactgaaaaatatgctaagaataacgtaa 19666964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 7583819 - 7583874
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||||| ||||||| ||||||||||||||||||    
T  7583819 tttttgctgctaaaacctactgaaaatgattgaaaaagatgctaagaataacgtaa 7583874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 15166495 - 15166550
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||||||||||||| ||||||||||||| ||||    
T  15166495 tttttgctgctaaaacctactgaaaatgactgaaaaacatgctaagaataatgtaa 15166550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 8928361 - 8928328
Alignment:
Q  67 aaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||||| ||||||||||    
T  8928361 aaaatgactgaaaaatatgctaaaaataacgtaa 8928328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 11845275 - 11845236
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  11845275 ctactaaaaataactgaaaaatatgctaagaataacgtaa 11845236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 26647426 - 26647372
Alignment:
Q  46 ttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||| ||| | ||||| |||| |||||||||||||||||||||||||||||    
T  26647426 ttttgttggtaaaacctactgaaaaagactgaaaaatatgctaagaataacgtaa 26647372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 21536958 - 21536921
Alignment:
Q  63 actaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  21536958 actaaaaatgactgaaaaatatgctaaaaataacgtaa 21536921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 16180744 - 16180800
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaaa 101  Q
    |||||||||||||  |||||| ||||| ||||||||| ||||||||||||| |||||    
T  16180744 tttttgttgctaaactctactgaaaataactgaaaaacatgctaagaataatgtaaa 16180800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 729163 - 729218
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||||||||||||  ||||||||||||||||||    
T  729163 tttttgctgctaaaacctactgaaaatgactgaaaagcatgctaagaataacgtaa 729218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 14235338 - 14235299
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  14235338 ctactaaaaatgactgaaaaacatgctaagagtaacgtaa 14235299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 15542378 - 15542323
Alignment:
Q  45 tttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||| |||||| | ||||| ||||||||||||||| ||| ||||||||||||||    
T  15542378 tttttgctgctaaaacctactgaaaatgactgaaaaacatgttaagaataacgtaa 15542323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 21663144 - 21663105
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  21663144 ctactgaaaatgactgaaaaacatgctaagaataacgtaa 21663105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 22621836 - 22621875
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  22621836 ctactaaaaatgactgaaaaacatgctaagaattacgtaa 22621875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 27973346 - 27973385
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  27973346 ctactgaaaatgactgaaaaacatgctaagaataacgtaa 27973385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 24901237 - 24901291
Alignment:
Q  46 ttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||| || ||| ||||||| ||||||| ||||||||||||||| ||||||||||    
T  24901237 ttttgctggtaaaatctactgaaaatgattgaaaaatatgctaaaaataacgtaa 24901291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 17016864 - 17016831
Alignment:
Q  65 taaaaatgactgaaaaatatgctaagaataacgt 98  Q
    ||||||| ||||||||||||||||||||||||||    
T  17016864 taaaaataactgaaaaatatgctaagaataacgt 17016831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 24464664 - 24464696
Alignment:
Q  68 aaatgactgaaaaatatgctaagaataacgtaa 100  Q
    |||||||||||||| ||||||||||||||||||    
T  24464664 aaatgactgaaaaacatgctaagaataacgtaa 24464696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 4926 - 4887
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  4926 ctactaaaattgactgaaaaacatgctaagaataacgtaa 4887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 92882 - 92843
Alignment:
Q  61 ctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  92882 ctactaaaaataactgaaaaacatgctaagaataacgtaa 92843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 63998 - 63961
Alignment:
Q  65 taaaaatgactgaaaaatatgctaagaataacgtaaaa 102  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  63998 taaaaatgactgaaaaatatgctaaaaatagcgtaaaa 63961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 6479 - 6535
Alignment:
Q  44 atttttgttgctaacatctactaaaaatgactgaaaaatatgctaagaataacgtaa 100  Q
    ||||||||||||||   ||| | ||||| ||||||||| ||||||||||||||||||    
T  6479 atttttgttgctaaatcctattgaaaataactgaaaaacatgctaagaataacgtaa 6535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University