View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11957_low_15 (Length: 248)

Name: NF11957_low_15
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11957_low_15
NF11957_low_15
[»] chr8 (3 HSPs)
chr8 (19-158)||(4402380-4402520)
chr8 (162-224)||(4402686-4402748)
chr8 (210-248)||(4402745-4402783)
[»] chr2 (2 HSPs)
chr2 (165-194)||(37508722-37508751)
chr2 (175-211)||(12364199-12364235)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 4402380 - 4402520
Alignment:
Q  19 atccgtaattt-gagtttttattccaggtccatgtttaatgcgctttcatgagatgcacctatgctcatttgagatatgtattaacaattaaccttctat 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4402380 atccgtaattttgagtttttattccaggtccatgtttaatgcgctttcatgagatgcacctatgctcatttgagatatgtattaacaattaaccttctat 4402479  T
Q  118 tgatttttggtctcaaccttctcgttctcatagaaaaagac 158  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4402480 tgatttttggtctcaaccttctcgttctcatagaaaaagac 4402520  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 4402686 - 4402748
Alignment:
Q  162 gcaaaattacatatttgattccttaatttattttgtggttttaatttgatttcataactattt 224  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4402686 gcaaaattacatatttgattccttaacttattttgtggttttaatttgatttcataactattt 4402748  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 4402745 - 4402783
Alignment:
Q  210 atttcataactatttgtcatgttttggtcttataacctt 248  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4402745 atttcataactatttgtcatgttttggtcttataacctt 4402783  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 37508722 - 37508751
Alignment:
Q  165 aaattacatatttgattccttaatttattt 194  Q
    ||||||||||||||||||||||||||||||    
T  37508722 aaattacatatttgattccttaatttattt 37508751  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 12364199 - 12364235
Alignment:
Q  175 tttgattccttaatttattttgtggttttaatttgat 211  Q
    ||||||||||||||||||||| || ||||||||||||    
T  12364199 tttgattccttaatttattttctgtttttaatttgat 12364235  T

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