View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_low_18 (Length: 231)
Name: NF11957_low_18
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 46647237 - 46647026
Alignment:
| Q |
20 |
caccaccaacatcaaatctatggttccaattttgttctgtttagccatgtaatccaacgtccgaatttgattccgactttataatccattttaatgcttt |
119 |
Q |
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| T |
46647237 |
caccaccaacatcaaatctatggttccaattttgttctgtttagccatgtaatccaacgtccgaatttgattccgactttataatccattttaatgcttt |
46647138 |
T |
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| Q |
120 |
taaactttttcttttgttctttgattcatttaatcaaatccaccgtcccctttaggttttaatttcgctctttaattccaaccataagttgtgaccggaa |
219 |
Q |
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| T |
46647137 |
taaactttttcttttgttctttgattcatttaatcaaatccaccgtcccctttaggttttaatttcgctctttaattccaaccataagttgtgaccggaa |
46647038 |
T |
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| Q |
220 |
actcgcctgcgg |
231 |
Q |
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| T |
46647037 |
actcgcctgcgg |
46647026 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 21852908 - 21852944
Alignment:
| Q |
187 |
ctctttaattccaaccataagttgtgaccggaaactc |
223 |
Q |
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| T |
21852908 |
ctctttaattccaaccagaagttgtgaccggaaactc |
21852944 |
T |
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