View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_low_21 (Length: 221)
Name: NF11957_low_21
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 53120703 - 53120866
Alignment:
| Q |
12 |
tgtgtgtgtacacttcacaaaacaaaaaagtgtttgattatataagatattagtgtaaaaaagttttgcatgtacatcaaataatgtgttatcacatcgt |
111 |
Q |
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| T |
53120703 |
tgtgtgtgtacacttaacacaaaaaaaaa-tgtttgattatataagatattagtgtaaaaaagttttacatttacatcaaataatgtgttatcacatcat |
53120801 |
T |
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| Q |
112 |
acagtttagcatatggttactaagacattgatatgaggggttagattcggtcttcaaattctaca |
176 |
Q |
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| T |
53120802 |
acaatttagcatgtagttactaagacattgatatgaggggttaggttcggtcttcaaattctaca |
53120866 |
T |
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