View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_low_3 (Length: 450)
Name: NF11957_low_3
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 31485008 - 31485438
Alignment:
| Q |
1 |
agtgcatgtttgataacattaaggtgtataaacaaaaattaaattaaa-----atgtgacagattcgttgggaattcagccccacgtgattgtacaacta |
95 |
Q |
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| T |
31485008 |
agtgcatatttgataacattaaggtgtataaacaaaaattaaattaaattaaaatgtgacagattcgttgggaattcagccccacgtgattgtacaacta |
31485107 |
T |
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| Q |
96 |
aagaaagaagcagactctgctgttttgaggtaacagtgtaaaaccaaacaagtgatgctaagtccttaaccctgatgtcaaaatgattggtccacatagg |
195 |
Q |
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| T |
31485108 |
aag----aagcagactctgctgttttgaggtaacagtgcaaaaccaaacaagtgatgccaagtccttaaccctgatgtcaaaatgattggtccacatagg |
31485203 |
T |
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| Q |
196 |
ttttggattttccaagagaaataggacaagnnnnnnngaggctacacatttagcaatagagtctcacctttgaaattgtaatcaatgcatcgtttggtaa |
295 |
Q |
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| T |
31485204 |
ttttggattttccaagagaaataggacaagaaaaaaagaggctacacattttgcaat--------acctttgaaattgtaatcaatgcatcgtttggtaa |
31485295 |
T |
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| Q |
296 |
ttggtgaaggtgagcaccattcgtccttgtaaaaagacgagtcaagaaccgatactggactcggttgtaactcgttcgcggctgttatctcggctatgct |
395 |
Q |
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| T |
31485296 |
ttggtgaaggtgagcaccactcgtccttgtaaaaagacgagtcaagaaccgatactggactcggttgtaactcgttcgcggctgttatctcagctatgct |
31485395 |
T |
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| Q |
396 |
gttcaacaatttatcacatctatcaagcagattcctcccttct |
438 |
Q |
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| T |
31485396 |
gttcaacaatttatcacatctatcaagcagattcctcccttct |
31485438 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 38447514 - 38447467
Alignment:
| Q |
316 |
tcgtccttgtaaaaagacgagtcaagaaccgatactggactcggttgt |
363 |
Q |
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| T |
38447514 |
tcgtctttgtaaaacgaggagtcaagaaccgatactggactcggttgt |
38447467 |
T |
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