View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11957_low_4 (Length: 412)

Name: NF11957_low_4
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11957_low_4
NF11957_low_4
[»] chr1 (14 HSPs)
chr1 (103-409)||(36633347-36633653)
chr1 (22-103)||(36632949-36633030)
chr1 (157-312)||(36637813-36637965)
chr1 (1-75)||(36632876-36632952)
chr1 (25-74)||(7015943-7015992)
chr1 (25-76)||(28033941-28033992)
chr1 (22-76)||(51043040-51043094)
chr1 (24-76)||(41463907-41463959)
chr1 (22-77)||(9026244-9026298)
chr1 (24-67)||(34502901-34502944)
chr1 (24-73)||(13362733-13362782)
chr1 (23-76)||(17063256-17063309)
chr1 (22-77)||(16299863-16299918)
chr1 (31-76)||(10556292-10556337)
[»] chr7 (3 HSPs)
chr7 (217-317)||(46939438-46939538)
chr7 (22-67)||(21142363-21142408)
chr7 (270-301)||(46938346-46938377)
[»] chr2 (6 HSPs)
chr2 (23-77)||(18318336-18318390)
chr2 (24-68)||(43305278-43305322)
chr2 (24-67)||(38623663-38623706)
chr2 (22-61)||(8441410-8441450)
chr2 (23-59)||(36613315-36613351)
chr2 (23-59)||(36621166-36621202)
[»] chr8 (5 HSPs)
chr8 (24-77)||(44251284-44251337)
chr8 (21-70)||(3813258-3813307)
chr8 (22-77)||(3234686-3234741)
chr8 (24-62)||(13068283-13068321)
chr8 (21-62)||(42939284-42939325)
[»] chr6 (3 HSPs)
chr6 (23-67)||(5583605-5583649)
chr6 (22-79)||(31636903-31636960)
chr6 (23-60)||(3435789-3435826)
[»] chr3 (5 HSPs)
chr3 (24-76)||(23308596-23308648)
chr3 (23-62)||(22926427-22926466)
chr3 (24-75)||(4549524-4549575)
chr3 (22-76)||(18365804-18365858)
chr3 (23-67)||(46799049-46799093)
[»] chr5 (4 HSPs)
chr5 (22-77)||(1422660-1422715)
chr5 (21-67)||(20869354-20869400)
chr5 (21-76)||(19264713-19264768)
chr5 (22-75)||(42078958-42079010)
[»] chr4 (6 HSPs)
chr4 (23-76)||(20281434-20281487)
chr4 (23-62)||(21622703-21622742)
chr4 (22-67)||(44342002-44342047)
chr4 (23-59)||(3525346-3525382)
chr4 (24-76)||(40184339-40184391)
chr4 (24-64)||(51875605-51875644)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 103 - 409
Target Start/End: Original strand, 36633347 - 36633653
Alignment:
Q  103 tatatgatatgatacgtattacactaacactactatttggctatcttgctcttgcacataacaagtgaaagttaagtggcatggcttctactaagtactt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36633347 tatatgatatgatacgtattacactaacactactatttggctatcttgctcttgcacataacaagtgaaagttaagtggcatggcttctactaagtacgt 36633446  T
Q  203 tgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgttcacttcagttacccagcagttttcaactttggtgattcaaattca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36633447 tgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgttcacttcagttacccagcagttttcaactttggtgattcaaattca 36633546  T
Q  303 gacacaggtgaactttgtgcagccaagggctttcaacccgccccacccaacggacaaaattacttcaaagctccagctgggagattctgtgatgtccatc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| || ||    
T  36633547 gacacaggtgaactttgtgcagccaagggctttcaacccgccccacccaacggacaaaattacttcaaagctccagccgggagattcagcgatggccgtc 36633646  T
Q  403 tcattgt 409  Q
    |||||||    
T  36633647 tcattgt 36633653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 36632949 - 36633030
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggttagcattacccttattgttattact 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36632949 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggttagcattactcttattgttattact 36633030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 157 - 312
Target Start/End: Original strand, 36637813 - 36637965
Alignment:
Q  157 cacataacaagtgaaagttaagtggcatggcttctactaagtactttgttgctttacaagttgtgttattttgcatatgtttggttgtggcaaattctgt 256  Q
    ||||||||||||||||||| |||| ||||| |||||   ||||| |||||||||| || | ||| || |||||||| | ||||| ||| |||||||||||    
T  36637813 cacataacaagtgaaagttcagtgacatgggttcta---agtacgttgttgctttgcatgctgtattcttttgcatgtctttggctgtagcaaattctgt 36637909  T
Q  257 tcacttcagttacccagcagttttcaactttggtgattcaaattcagacacaggtg 312  Q
    | |||||||||| ||||||| ||||||||||||||||||||  ||||| |||||||    
T  36637910 tgacttcagttatccagcagctttcaactttggtgattcaacctcagatacaggtg 36637965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 36632952 - 36632876
Alignment:
Q  1 tacccttattagaagttaagt--ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 75  Q
    |||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  36632952 tacccttattagaagtcaagaaaggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgattcatctttt 36632876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 7015992 - 7015943
Alignment:
Q  25 aatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttt 74  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7015992 aatatttgcattcaaaattgtgtaatcaatgcattaaatgcttcctcttt 7015943  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 28033941 - 28033992
Alignment:
Q  25 aatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  28033941 aatatttgcatttaaagttgtgtaatcaatgtattaaatgcttcctcttttg 28033992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 51043040 - 51043094
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||    
T  51043040 ggtaatatttatattcaaagttgtgtaatcaatgcattaaatacttcctcttttg 51043094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 41463959 - 41463907
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    |||||||||||||||||||| |||||||||||||||||||||||  |||||||    
T  41463959 taatatttgcattcaaagttatgtaatcaatgcattaaatgctttatcttttg 41463907  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 9026298 - 9026244
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 77  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||    
T  9026298 ggtaatatttacatttaaa-ttgtgtaatcaatgcattaaatgcttcatcttttgg 9026244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 34502944 - 34502901
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 67  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  34502944 taatatttgcattgaaagttgtgtaatcaatgcattaaaagctt 34502901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 13362782 - 13362733
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctt 73  Q
    |||||||| |||||||||||||||||| ||||||||| | ||||||||||    
T  13362782 taatatttacattcaaagttgtgtaattaatgcattacacgcttcctctt 13362733  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 17063256 - 17063309
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||| |||||||    
T  17063256 gtaatatttacattcgaagttgtagaatcaatgcattaaatgcttcatcttttg 17063309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 16299918 - 16299863
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 77  Q
    |||||||| |||||||||| |||||||||||||| ||||||| ||| || ||||||    
T  16299918 ggtaatatctgcattcaaaattgtgtaatcaatgaattaaatactttcttttttgg 16299863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 10556337 - 10556292
Alignment:
Q  31 tgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    ||||||||||||| || || |||| |||||||||||||||||||||    
T  10556337 tgcattcaaagttatgcaaccaatacattaaatgcttcctcttttg 10556292  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 46939538 - 46939438
Alignment:
Q  217 ttgtgttattttgcatatgtttggttgtggcaaattctgttcacttcagttacccagcagttttcaactttggtgattcaaattcagacacaggtgaact 316  Q
    ||||||||||||||| ||||||||  ||||||||||| ||| | |||| ||  ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  46939538 ttgtgttattttgcacatgtttggcagtggcaaattcagttgagttcaattttccagcagttttcaacttaggtgattcaaattcggacacaggtgaact 46939439  T
Q  317 t 317  Q
    |    
T  46939438 t 46939438  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 21142363 - 21142408
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 67  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||    
T  21142363 ggtaatatttacattcaaagtagtgtgatcaatgcattaaatgctt 21142408  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 301
Target Start/End: Complemental strand, 46938377 - 46938346
Alignment:
Q  270 ccagcagttttcaactttggtgattcaaattc 301  Q
    ||||||||||||||||||||||||||||||||    
T  46938377 ccagcagttttcaactttggtgattcaaattc 46938346  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 18318390 - 18318336
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  18318390 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctttatcttttgg 18318336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 43305278 - 43305322
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttc 68  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||    
T  43305278 taatatttgcatttaaagttgtgtaatcaatgcattaaatacttc 43305322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 38623663 - 38623706
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 67  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  38623663 taatatttgcatttaaagttgtgtaatcaatgaattaaatgctt 38623706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 8441410 - 8441450
Alignment:
Q  22 ggtaatatttgcattcaaa-gttgtgtaatcaatgcattaa 61  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  8441410 ggtaatatttgcattcaaaagttgtgtaatcaatacattaa 8441450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 36613315 - 36613351
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcatt 59  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36613315 gtaatatttgcatggaaagttgtgtaatcaatgcatt 36613351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 36621166 - 36621202
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcatt 59  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36621166 gtaatatttgcatggaaagttgtgtaatcaatgcatt 36621202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 44251284 - 44251337
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 77  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  44251284 taatatttgtattcaaagttgtgtaatcaatgcattaaatgtttcctcttttgg 44251337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 3813258 - 3813307
Alignment:
Q  21 tggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcct 70  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  3813258 tggtaatatttgcattcaaagttgtgtaatcaatgtaataaatgcttcct 3813307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 3234741 - 3234686
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 77  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||| || |||||    
T  3234741 ggtaatatttgcattcaaaattgtgtaatcaatgaattaaaggcttcttcatttgg 3234686  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 13068321 - 13068283
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaa 62  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  13068321 taatatttgcattgaaagttgtgtaatcaatgtattaaa 13068283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 42939284 - 42939325
Alignment:
Q  21 tggtaatatttgcattcaaagttgtgtaatcaatgcattaaa 62  Q
    ||||| |||||||||| ||||||||||| |||||||||||||    
T  42939284 tggtagtatttgcattaaaagttgtgtagtcaatgcattaaa 42939325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 5583605 - 5583649
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 67  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  5583605 gtaatatttgcaatcaaagttgtgtaatcaatgcattaaatgctt 5583649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 31636960 - 31636903
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttggtt 79  Q
    ||||||||||||||| ||||||||||||| ||| |||||||| |||  ||||||||||    
T  31636960 ggtaatatttgcatttaaagttgtgtaattaatacattaaatactttttcttttggtt 31636903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 3435826 - 3435789
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcatta 60  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  3435826 gtaatatttgcattgaaagttatgtaatcaatgcatta 3435789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 23308596 - 23308648
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  23308596 taatatttacattcaaaattgtgtaatcaatgcattaaatacttcctcttttg 23308648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 22926466 - 22926427
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcattaaa 62  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  22926466 gtaatatttgcattgaaagttgtgtaatcaatgcattaaa 22926427  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 4549575 - 4549524
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 75  Q
    |||||||||||||||||||||||| || |||||||| ||| ||| |||||||    
T  4549575 taatatttgcattcaaagttgtgttattaatgcattgaatactttctctttt 4549524  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 18365858 - 18365804
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    |||||||||| | ||||||||| |||||| ||||||||||| |||| ||||||||    
T  18365858 ggtaatatttaccttcaaagttatgtaataaatgcattaaaagctttctcttttg 18365804  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 46799093 - 46799049
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 67  Q
    ||||| |||||||| |||| |||||||||||||||||||| ||||    
T  46799093 gtaatttttgcattaaaagatgtgtaatcaatgcattaaaagctt 46799049  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 1422660 - 1422715
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttgg 77  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||    
T  1422660 ggtaatatttgcattcaaagttggataatcaatgcattgaatgcttactcttttgg 1422715  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 20869354 - 20869400
Alignment:
Q  21 tggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 67  Q
    ||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  20869354 tggtagtatttgcattgaaagttgtgtaatcaatgcattaaaagctt 20869400  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 19264768 - 19264713
Alignment:
Q  21 tggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    ||||||| ||||||||||||||||  |||||||||||||||||  || ||||||||    
T  19264768 tggtaatgtttgcattcaaagttggataatcaatgcattaaatattttctcttttg 19264713  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 42079010 - 42078958
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctctttt 75  Q
    |||||||| |||||||||| || |||||| |||||||||||||||| |||||||    
T  42079010 ggtaatatatgcattcaaa-ttatgtaataaatgcattaaatgctttctctttt 42078958  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 20281487 - 20281434
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||    
T  20281487 gtaatatttgcatttaaaattgtgtaatcaatgcattaaatgtttcatcttttg 20281434  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 21622742 - 21622703
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcattaaa 62  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  21622742 gtaatatttacattgaaagttgtgtaatcaatgcattaaa 21622703  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 44342002 - 44342047
Alignment:
Q  22 ggtaatatttgcattcaaagttgtgtaatcaatgcattaaatgctt 67  Q
    |||||||||| |||||||||||||| | ||||| ||||||||||||    
T  44342002 ggtaatatttacattcaaagttgtgcattcaatacattaaatgctt 44342047  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 3525346 - 3525382
Alignment:
Q  23 gtaatatttgcattcaaagttgtgtaatcaatgcatt 59  Q
    |||||||||||||| |||||||| |||||||||||||    
T  3525346 gtaatatttgcattgaaagttgtataatcaatgcatt 3525382  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 40184391 - 40184339
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatgcttcctcttttg 76  Q
    |||||| || ||||||||||||||||||| ||||||||||  ||| |||||||    
T  40184391 taatatatgtattcaaagttgtgtaatcattgcattaaatatttcttcttttg 40184339  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 51875644 - 51875605
Alignment:
Q  24 taatatttgcattcaaagttgtgtaatcaatgcattaaatg 64  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  51875644 taatatttgcattcaa-gttgtgtaatcaatacattaaatg 51875605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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