View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_low_7 (Length: 327)
Name: NF11957_low_7
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 8212489 - 8212181
Alignment:
| Q |
1 |
atcccaccgagcaaataatttcctcccaacaaaagcctcccaaacggagccatcccaatttcaggaaaaaccgttttcaatgcaaactgaaccggtatta |
100 |
Q |
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| T |
8212489 |
atcccaccgagcaaataatttcctcccaacaaaagcctcccaaacggagccatcccaatttcaggaaaaaccgttttcaatgcaaactgaaccggtatta |
8212390 |
T |
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| Q |
101 |
aaccggtgaaccggttattctccaaagacaaagaagaaagctttggcatcgttgctaaaaacgcaggtaaaaaaccttgaagctggttattactcaaatc |
200 |
Q |
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| T |
8212389 |
aaccggtgaaccggttattctccaaagacaaagaagaaagctttggcatcgtagctaaaaacgcaggtaaaaaaccttcaagctggttattactcaaatc |
8212290 |
T |
|
| Q |
201 |
aaccgctataagctcgctttgagatgattctgttccataagaaggagcttcaatggaggaaaattcgttgaatgaaagtgttaactgttgcaaagatgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8212289 |
aaccgctataagctcgctttgagatgattctgttccataagaaggagcttcaatggaggaaaattcgttgaatgaaagtgttaactgttgcaaagatgga |
8212190 |
T |
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| Q |
301 |
agctgaaag |
309 |
Q |
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||||||||| |
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| T |
8212189 |
agctgaaag |
8212181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 38554031 - 38553921
Alignment:
| Q |
81 |
tgcaaactgaaccggtattaaaccggtgaaccggttattctccaaagacaaagaagaaagctttggcatcgttgctaaaaacgcaggtaaaaaaccttga |
180 |
Q |
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| T |
38554031 |
tgcaaactaaactggtatcaaaccagtgaaccggttattctccaaagacaaagatgaaagc-ttagcttcgtagctaaaaatgaaggtgaaaaaccttca |
38553933 |
T |
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| Q |
181 |
agctggttatta |
192 |
Q |
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||||||| |||| |
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| T |
38553932 |
agctggtaatta |
38553921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 38573014 - 38572927
Alignment:
| Q |
106 |
gtgaaccggttattctccaaagac-aaagaagaaagctttggcatcgttgctaaaaacgcaggtaaaaaaccttgaagctggttatta |
192 |
Q |
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||||| |||||||||||||||||| ||||| |||||||| |||||||| |||||||| | |||| ||||||||| ||| ||||||||| |
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| T |
38573014 |
gtgaatcggttattctccaaagacaaaagatgaaagcttaggcatcgtagctaaaaatgtaggtgaaaaaccttcaagttggttatta |
38572927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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