View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11957_low_8 (Length: 297)
Name: NF11957_low_8
Description: NF11957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11957_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 8161908 - 8162175
Alignment:
| Q |
16 |
aaaattgcaatgacccttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgagg |
115 |
Q |
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| T |
8161908 |
aaaattgcaatgacccttttcattgacaaaccatcattcccagaaggtctctaggtccttgcaattgatcatgacatcactctccttaattccatcgagg |
8162007 |
T |
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| Q |
116 |
agatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatctttttcggtaaaaatatcttactttaatttgtttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8162008 |
agatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatcttttttggtaaaaatatcttactttaatttgtttt |
8162107 |
T |
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| Q |
216 |
catgtttgtttatctttttattgtttggatcagttgccaaatgtaatgtggcttctgatgcattggat |
283 |
Q |
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| T |
8162108 |
catgtttgtttatctttttattgtttggattagttaccaaatgtaatgtggcttctgatgcattggat |
8162175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 7218191 - 7218453
Alignment:
| Q |
16 |
aaaattgcaatgacccttttcattgacaaacc---atcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcg |
112 |
Q |
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| T |
7218191 |
aaaattgcaatggcccttttcaccgacaaacctgcatcattcccagaaggtctcaaggttcttgcaattgatcatgacatcactctcctgaattccatcg |
7218290 |
T |
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| Q |
113 |
aggagatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatctttttcggtaaaaatatcttactttaatttgt |
212 |
Q |
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| T |
7218291 |
aggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggtaaaaat-tcttacttttatatgt |
7218389 |
T |
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| Q |
213 |
tttcatgtttgtttatctttttattgtttggatcagttgccaaatgtaatgtggcttctgatgc |
276 |
Q |
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| T |
7218390 |
tttcatgtttctttattctgatattgtttatttcagttaccaaatgtagcatggcttctgatgc |
7218453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 7243678 - 7243808
Alignment:
| Q |
17 |
aaattgcaatgacccttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgagga |
116 |
Q |
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| T |
7243678 |
aaattgcaatggcttttttcattgacaacccatcattccctgctggtctcaaggttattgctattgatcatgacatcactgttcttaacactattgagga |
7243777 |
T |
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| Q |
117 |
gatgtgtaatcgatgcaattatcaaggttag |
147 |
Q |
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| T |
7243778 |
tatgtgtaatcgattccattatcaaggttag |
7243808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 7317876 - 7317778
Alignment:
| Q |
32 |
ttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgtaatcgat |
130 |
Q |
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|||||| |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| || || || ||||||||||||||||||| |
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| T |
7317876 |
ttttcactgacaacccatcattcccagccggtctcaaggttattgcaattgatcatgacatcactttcctcaactctattgaggagatgtgtaatcgat |
7317778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 7324666 - 7324538
Alignment:
| Q |
24 |
aatgacccttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgt |
123 |
Q |
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| T |
7324666 |
aatggcccgtttcgttgacaacccatcattccctgctggtctaagggttattgccattgatcatgacatcattgttcttaacactattgaggatatgtgt |
7324567 |
T |
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| Q |
124 |
aatcgatgcaattatcaaggttaggtact |
152 |
Q |
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||||||| |||||||||||||| |||| |
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| T |
7324566 |
aatcgatatcattatcaaggttagttact |
7324538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 22766677 - 22766557
Alignment:
| Q |
32 |
ttttcattgacaaaccatcattcccagaaggtctcaaggtccttgcaattgatcatgacatcactctccttaattccatcgaggagatgtgtaatcgatg |
131 |
Q |
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||||||| ||||| ||||||||||| || |||||||| || |||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||| |
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| T |
22766677 |
ttttcatcgacaacccatcattccctgatggtctcaacgttattgcaattgatcatgacaccactttccttaacaccattgaggagatgtgtaatcgatg |
22766578 |
T |
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| Q |
132 |
caattatcaaggttaggtact |
152 |
Q |
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|||||||||||||| |||| |
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| T |
22766577 |
tcattatcaaggttagttact |
22766557 |
T |
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