View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11958_high_1 (Length: 748)

Name: NF11958_high_1
Description: NF11958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11958_high_1
NF11958_high_1
[»] chr4 (1 HSPs)
chr4 (18-733)||(30463805-30464533)


Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 18 - 733
Target Start/End: Original strand, 30463805 - 30464533
Alignment:
Q  18 actaccaaagatggaagccaagaagagatggagagtttttcaatggggagtactacaattacaaccggtgactttggcgacctttccgaaggaaatttat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30463805 actaccaaagatggaagccaagaagagatggagagtttttcaatggggagtactacaattacaactggtgactttggcgacctttccgaaggaaatttat 30463904  T
Q  118 tggaaagcatcaacttcgacgacttctttgttggcatcaacatcgatggagacatcttgccggatttggagatggatccagagatgtttgctgagttctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30463905 tggaaagcatcaacttcgacgacttctttgttggcatcaacgtggatggagacatcttgccggatttggagatggatccagagatgtttgctgagttctc 30464004  T
Q  218 cgttagcgctaacggcgaggaatcagagatgaattcatcggcgtcattggagaacaacgacagcaaagtagaagagaagaattcaaagaaagattatgag 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  30464005 cgttagcgctaacggcgaggaatcagagatgaattcgtcggcgtcattggagaaca---acagcaaagtagaagagaagaattcaaagaaagattatgag 30464101  T
Q  318 gataaaacaagttgttcgggtcaaggctcggaagagatagcgagtaaaagagatgaatctgtggttgtgaatccattgtt---------------aaaag 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||    
T  30464102 gataaaacaagttgttcgggtcaaggctcggaagagatagcgagtaaaagagatgaatctgtggttgtgaatccattgttaaaagatgcaggtggaaaag 30464201  T
Q  403 gaaggaaatcatcgagtaaatctaagaatcctcaagggaagagaaaagtcaaggtatacttaaataaggaaactatagagttttattcttgctaagtgg- 501  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30464202 gaaggaaatcatcgagtaaatctaagtatcctcaagggaagagaaaagtcaaggtatacttaaataaggaaactatagagttttattcttgctaagtggt 30464301  T
Q  502 tttatctaaatttggtaattaaattcagtgtaactggagttcatcatgtgtagtactaactttttagctaaggttctgtcactgtctttttgttaccact 601  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30464302 tttatctaaatttggtaattaaattcagtgtagctagagttcatcatgtgtagtactaactttttagctaaggttctctcactgtctttttgttaccact 30464401  T
Q  602 ctttacaaagagtctcagtttgtctaaagagctcacgggtaccctaacggtagatacacaataaaaaataatagaagattgcaatttttcaaaattttgc 701  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30464402 cttgacaaagagtctcagtttgtctaaagagctcacgggtaccctaacggtagatacacaataaaaaataatagaagattgcaatttttcaaaattttgc 30464501  T
Q  702 tggtaattcgtagtaagtgtatgtttggtatt 733  Q
    ||||||||||||||||||||||||||||||||    
T  30464502 tggtaattcgtagtaagtgtatgtttggtatt 30464533  T

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