View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11958_high_4 (Length: 571)
Name: NF11958_high_4
Description: NF11958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11958_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 37448119 - 37447846
Alignment:
| Q |
1 |
ttggataaacaacttaattaagcgttataagcacc--acatttactacctatgtctctaaaataaaggaccctcttctatgtctatatatgagtgataca |
98 |
Q |
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| T |
37448119 |
ttggataaacaacttaattaagcgttataagcacctaacatttactacctatgtctctaaaataaaggaccctcttctatgtctatatatgagtgataca |
37448020 |
T |
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| Q |
99 |
tacagctcaacaattaacaacatgaacaataaaataaaaaagaattggtgtgatggaacataaacaaatgatataatgaataaaatcatcaccttttcca |
198 |
Q |
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| T |
37448019 |
tacagctcaacaattaaaaacatgaacaataaaataaaaaagaattggtgtgatggaacataaacaaatgatataatgaataaaatcatcaccttttcca |
37447920 |
T |
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| Q |
199 |
agttggtcatcatgtttgacagtgatgtcattgcagtgccttgaagagaaaatgttttgataatattcctgcat |
272 |
Q |
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| T |
37447919 |
agttggtcatcatgtttgacagtgatgtcattgcagtgccttgaagagaaaatcttttgataatattcctgcat |
37447846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 348 - 499
Target Start/End: Complemental strand, 37447770 - 37447619
Alignment:
| Q |
348 |
ttggtgaggtgagggaggagagagaagtgtggtaatttcattggcacaacgcgaggtaatacagcaaattggtggttccattgaaacaaaagttggaact |
447 |
Q |
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| T |
37447770 |
ttggtgaggtgagggaggagagagaagtgtggtaatttcattggcacaacgcgaggtaatacaacaaattggtggttccattgaaacaaaagttggaact |
37447671 |
T |
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| Q |
448 |
ttggaagagagtgtcaacgacacaacacaaacgtgacggcgccaatagtatc |
499 |
Q |
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| T |
37447670 |
ttggaagagagtgtcaacaacacaacacaaacgtgacggcgccaatagtatc |
37447619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 495 - 546
Target Start/End: Complemental strand, 37447588 - 37447537
Alignment:
| Q |
495 |
gtatccgtgtgtgagtgtttgtgctttagatttcacacgattgtataaacta |
546 |
Q |
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| T |
37447588 |
gtatccgtgtgtgagtgtttgtgctttagatttcacacgattgtataaacta |
37447537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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