View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11958_low_2 (Length: 608)
Name: NF11958_low_2
Description: NF11958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11958_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Complemental strand, 809749 - 809177
Alignment:
| Q |
18 |
cagagatagaagggaaatattgtttgttgcttttttcttcttc-agcataacatgttatgtgagtaaaaagaacatagcctgttatcccgtctggtctaa |
116 |
Q |
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| T |
809749 |
cagagatagaaaggaaatattgtttgttgctttttttttcttccagcataacatgttatgtgagtaaaaagaacatagcctgttatcccgtctggtctaa |
809650 |
T |
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| Q |
117 |
aaatgtgagaaattcgagcttaagcatattatactatacaatattcgtcagactaaaggaaaataaggtccttcaaagcttgattcttgagtnnnnnnnn |
216 |
Q |
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| T |
809649 |
aaatgtgagaaattcgagcttaagcatattatactatacaatattcgtcagacaaaaggaaaataaggtccttcaaagcttgattcttgagtaaaaaaaa |
809550 |
T |
|
| Q |
217 |
-ctgaactcaataaacagctaacaacaaagcataagataaaaatgtttgatgaatctatactcagaaatatcctaaagcatataacaaataacaatactg |
315 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
809549 |
actgaactcaataa-cagctaacaacaaagcataagataaaaatgttagatgaatctatactcagaaatatcctaaagcatataacaattaacaatactg |
809451 |
T |
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| Q |
316 |
aaatcaactctaatattgaccttttcaatagcacagttgaagagcttcattgcaatttgcaagtacaaaaatcaaatgcaaatgcccaaaaggtaaatat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
809450 |
aaatcaactctaatattgaccttttcaatagcacagttgaagagcttcattgcaatttgcaagtacaaaaatcaaatgcaaatgcccaaaaggtaaatat |
809351 |
T |
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| Q |
416 |
ggagtcactccattttaaggaaagcaaagcaataataaaaacagaggataccagataaattgcagcagaggggaggacactgcagagggagagtgagata |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
809350 |
ggagtcactccattttaaggaaagcaaagcaataataaaaacagaggataccagaaaaattgcagcagaggggaggacactgcagagggagagtgagata |
809251 |
T |
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| Q |
516 |
aatacactgcaataggtctgccattttctcacctctctttcttctaacacatattaagtttcctccctcttttg |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
809250 |
aatacactgcaataggtctgccattttctcacctctctttcttctaacacatattaagtttcctccctcttttg |
809177 |
T |
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