View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11958_low_5 (Length: 525)
Name: NF11958_low_5
Description: NF11958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11958_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Complemental strand, 371966 - 371472
Alignment:
| Q |
17 |
aggtataatatatatttataccttggatattgtttcctttttcagaatgcaatataaacatatcaaatcttgaatatcttcaatttatattgctcttgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
371966 |
aggtataatatatatttataccttggatattgtttcctttttcagaatgcaatataaacatatcaaatcttgaatatcttcaatttatattgctcttgat |
371867 |
T |
|
| Q |
117 |
ttcattttaaaaatataataaaaccactatccgaatgtatatataaaaacaattcgttgatgnnnnnnnnntatgcaccctaggtagggtttcaatcgat |
216 |
Q |
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| T |
371866 |
t-cattttaaaaatataataaaaccactatccgaatgtatatataaaaacaattcgttgataaaaaaaaaatatgcaccctaggtagggtttcaatcgat |
371768 |
T |
|
| Q |
217 |
agatagacgtgttttaaccctactgactacaattgcttcattagcttccatggagatgaggcaaccaatcaatcctctaggtttgttttatctgttaccg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
371767 |
agatagacgtgttttaaccctactgactacaattgcttcattagcttccatggagatgaggcaaccaatcaatcctctaggtttgttttatctgttaccg |
371668 |
T |
|
| Q |
317 |
ctcgaattgatgttggaaatcttgtacaggctcgccgtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattattttcgatccta |
416 |
Q |
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| T |
371667 |
ctcaaattgatgttggaaatcttgtacaggctcgccgtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattatttccgatccta |
371568 |
T |
|
| Q |
417 |
aattcgccaaagatcactttcgcttgtcaaagacccgtcattaccacctcctcatatgcccgtgggattttcgtaatgaaaaggggttcgttctct |
512 |
Q |
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| T |
371567 |
aattcgccaaagatcactttcgcttgtcaaagacccgtcattaccacctcctcatatgcccgtgggattttcgtaatgaaaaggggttcgttctct |
371472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 317 - 481
Target Start/End: Complemental strand, 7565627 - 7565463
Alignment:
| Q |
317 |
ctcgaattgatgttggaaatcttgtacaggctcgccgtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattattttcgatccta |
416 |
Q |
| |
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||||| ||| |||| ||||||||| | |||||| ||||||| ||||| |||||||| | |||||| || ||| |||||||||| || |||| |||||||| |
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| T |
7565627 |
ctcgatttgttgttagaaatcttgcataggctccccgtgaaatcacttttgacacttaggtgtgtgtgtaagtccttgaattcaataatttccgatccta |
7565528 |
T |
|
| Q |
417 |
aattcgccaaagatcactttcgcttgtcaaagacccgtcattaccacctcctcatatgcccgtgg |
481 |
Q |
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| T |
7565527 |
aattcgctaaagatcaccttcgcttgtcacaaacccgccattaccacctcctcagatgcccgtgg |
7565463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 327 - 479
Target Start/End: Complemental strand, 1460401 - 1460249
Alignment:
| Q |
327 |
tgttggaaatcttgtacaggctcgccgtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattattttcgatcctaaattcgccaa |
426 |
Q |
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|||| ||||| |||||| | ||| | ||||| ||||||||||||||||||||||| | ||||||||||||||| | |||| ||||||||||| |||| |
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| T |
1460401 |
tgttagaaattttgtacggtctccctgtgaaatcactcttgacactcaagtgtgtttccaagcccttgaattctttaatttctgatcctaaattttccaa |
1460302 |
T |
|
| Q |
427 |
agatcactttcgcttgtcaaagacccgtcattaccacctcctcatatgcccgt |
479 |
Q |
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||||||| ||||||||||| ||||||| ||| || |||||||| ||||||||| |
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| T |
1460301 |
agatcaccttcgcttgtcacagacccgccataacaacctcctcgtatgcccgt |
1460249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 327 - 466
Target Start/End: Complemental strand, 1442971 - 1442832
Alignment:
| Q |
327 |
tgttggaaatcttgtacaggctcgccgtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattattttcgatcctaaattcgccaa |
426 |
Q |
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|||| |||||||| ||||||||| | ||||||| || ||||||||||||| |||||||||| ||||| ||||||||||| |||||||| ||| |||| |
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| T |
1442971 |
tgttagaaatcttttacaggctccctttgaagtcgctattgacactcaagtaagtctgcaagctcttgatttccattatttctgatcctaacttcaccaa |
1442872 |
T |
|
| Q |
427 |
agatcactttcgcttgtcaaagacccgtcattaccacctc |
466 |
Q |
| |
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||||||| ||||||||||| |||||| |||||||||||| |
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| T |
1442871 |
agatcaccttcgcttgtcacggacccgccattaccacctc |
1442832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 353 - 479
Target Start/End: Complemental strand, 1471763 - 1471637
Alignment:
| Q |
353 |
gtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattattttcgatcctaaattcgccaaagatcactttcgcttgtcaaagaccc |
452 |
Q |
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||||| ||||||||||||||||||||||| | |||||||||||||| | | |||| ||||| ||||| ||||||| |||| ||||||||| | | |||| |
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| T |
1471763 |
gtgaaatcactcttgacactcaagtgtgtttccaagcccttgaatttcttaatttctgatcccaaatttgccaaaggtcaccttcgcttgttacacaccc |
1471664 |
T |
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| Q |
453 |
gtcattaccacctcctcatatgcccgt |
479 |
Q |
| |
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||||| ||||||||||| ||||||||| |
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| T |
1471663 |
gtcataaccacctcctcgtatgcccgt |
1471637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 449
Target Start/End: Original strand, 175497 - 175590
Alignment:
| Q |
356 |
aagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattattttcgatcctaaattcgccaaagatcactttcgcttgtcaaaga |
449 |
Q |
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|||||||||||||||||||| ||||||| ||| || || |||||| |||||| ||||| ||||||||||| |||||| ||||||||||||||| |
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| T |
175497 |
aagtcactcttgacactcaactgtgtctccaaaccttttaattcctttatttctgatcccaaattcgccaatgatcaccttcgcttgtcaaaga |
175590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 327 - 471
Target Start/End: Original strand, 55418944 - 55419087
Alignment:
| Q |
327 |
tgttggaaatcttgtacaggctcgccgtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattattttcgatcctaaattcgccaa |
426 |
Q |
| |
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|||| |||||| |||| ||||| | |||||||||||| ||| |||||||||||| ||||||||||||||| || | |||| ||||| | ||| ||||| |
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| T |
55418944 |
tgttagaaatcctgtataggcttcctgtgaagtcactcatgatactcaagtgtgtttgcaagcccttgaatgccttaatttctgatcccatatttgccaa |
55419043 |
T |
|
| Q |
427 |
agatcactttcgcttgtcaaagacccgtcattaccacctcctcat |
471 |
Q |
| |
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||||||| ||||||| ||| | | |||| |||||||||||||||| |
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| T |
55419044 |
agatcacattcgcttctcacacatccgt-attaccacctcctcat |
55419087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 472
Target Start/End: Original strand, 3926273 - 3926413
Alignment:
| Q |
332 |
gaaatcttgtacaggctcgccgtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattattttc-gatcctaaattcgccaaagat |
430 |
Q |
| |
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||||||||||| |||||| | |||||||||||| | ||||| ||||| | |||| |||||||||| |||| |||| ||||| ||||||| |||| || |
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| T |
3926273 |
gaaatcttgtataggctccctgtgaagtcactcctagtgctcaaatgtgtttccaagtccttgaattc-attaatttctgatcccaaattcgtcaaacat |
3926371 |
T |
|
| Q |
431 |
cactttcgcttgtcaaagacccgtcattaccacctcctcata |
472 |
Q |
| |
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||| ||| ||||||| |||| | | |||||||||||||||| |
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| T |
3926372 |
caccttcacttgtcacagactagaccttaccacctcctcata |
3926413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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