View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11959_high_10 (Length: 488)
Name: NF11959_high_10
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11959_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 24517105 - 24516632
Alignment:
| Q |
19 |
gaaatgacatgttgagaagggaagtagatttggagaaatctaaccgttaaaaaatgaggaagg-aacatccaaatttaggccacggtggaga-gtgtctc |
116 |
Q |
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| T |
24517105 |
gaaatgacatgttgaaaagggaagtagatttggagaaatctaaccgttaaaaaatgaggaagggaacatccaaatttaggccactgtggagaagtgtttc |
24517006 |
T |
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| Q |
117 |
gtaatttatggtggattaatattttgataatcattttatactataacaacgatcaatattgttaggtaagtagaagacttagatattacatacactcagg |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
24517005 |
gtaatttatggtggattaatattt-gataatcattttatactataacaacgatcaatattgttaggtaagtagaagacttagatattacatacacttacg |
24516907 |
T |
|
| Q |
217 |
actaagataatgatctaatgaaaacaaatagactttattgcact-------------tttggtcatgctcataaaaatatactcctttttaaattgaatt |
303 |
Q |
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| T |
24516906 |
actaagataatgatccaatgaaaacaaatagacttcattgcacttttgataatcaaatttgatcatgctcataaaaatatcctcctttttaaattgaact |
24516807 |
T |
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| Q |
304 |
ttttggacattcaattatcatatttgttacaattttagtttgaacttgattttatccatata-ttttttgaaggataaattttatccatataaaatggtg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
24516806 |
ttttggacattcaattatcatatttgttacaattttagtttgaacttgattttatccatatatttttttgaaggatagattttatccatataaaatggtg |
24516707 |
T |
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| Q |
403 |
tttttgcttaaaaaatgtgatttattaccccaattttgaatctc-tagagnnnnnnnttgctcactaggcccctt |
476 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |
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| T |
24516706 |
tttttgcttaaaaaatgtgatttattatcccaattttgaatctcttagagaaaaaaattgctcactaggcccctt |
24516632 |
T |
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