View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11959_high_11 (Length: 483)

Name: NF11959_high_11
Description: NF11959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11959_high_11
NF11959_high_11
[»] chr8 (9 HSPs)
chr8 (15-473)||(25391605-25392063)
chr8 (15-331)||(25617487-25617799)
chr8 (15-189)||(25358574-25358747)
chr8 (125-284)||(25494808-25494967)
chr8 (15-104)||(25494723-25494812)
chr8 (15-104)||(25678229-25678318)
chr8 (354-453)||(25617842-25617938)
chr8 (125-194)||(25678314-25678383)
chr8 (341-401)||(25650484-25650544)
[»] scaffold1041 (1 HSPs)
scaffold1041 (15-331)||(823-1139)
[»] scaffold0466 (3 HSPs)
scaffold0466 (15-275)||(7955-8215)
scaffold0466 (341-434)||(7737-7827)
scaffold0466 (273-331)||(7872-7930)


Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 15 - 473
Target Start/End: Original strand, 25391605 - 25392063
Alignment:
Q  15 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25391605 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttatttctataggaatccattcaaaaaggc 25391704  T
Q  115 atacttctcgtccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgagagacttgcgaaaaatactat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391705 atacttctcgtccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgagagacttgcgaaaaatactat 25391804  T
Q  215 atttcaatcaatctttcaagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttaga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391805 atttcaatcaatctttcaagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttaga 25391904  T
Q  315 agggtgtcgagtttatggattgttccctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataaataatgt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25391905 agggtgtcgagtttatggattgttccctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataaataatgt 25392004  T
Q  415 atggattatccattccctcatagatatctttaagtcatcgaggtgataagagctctgtg 473  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25392005 atggattatccattccctcatagatatctttaagtcatcaaggtgataagagctctgtg 25392063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 25617487 - 25617799
Alignment:
Q  15 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggc 114  Q
    |||||||||  |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||            || | |||||||||||||    
T  25617487 atttccaacgctaatatcttgtttccctctcactttttactttgtatccctatggtttcttaatgtatag------------gactgcattcaaaaaggc 25617574  T
Q  115 atacttctcgtccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggt-attttgatgagagacttgcgaaaaatacta 213  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||    
T  25617575 atacttctcgcccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtaaatttgatgagcgacttgcaaaaaatacta 25617674  T
Q  214 tatttcaatcaatc-tttca------agtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgct 306  Q
    |||||||||||||| |||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25617675 tatttcaatcaatcttttcagacttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagaaattggtagccttatgct 25617774  T
Q  307 tttttagaagggtgtcgagtttatg 331  Q
    |||||||||||||||||||||||||    
T  25617775 tttttagaagggtgtcgagtttatg 25617799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 25358574 - 25358747
Alignment:
Q  15 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggc 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25358574 atttccaacagtaatatattgtttacctctcgctttttactttgtatcccaatggtttcttaatgtacagt-ctttctataggaatccattcaaaaaggc 25358672  T
Q  115 atacttctcgtccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25358673 atacttctcgtccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttg 25358747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 125 - 284
Target Start/End: Original strand, 25494808 - 25494967
Alignment:
Q  125 tccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgagagacttgcgaaaaatactatatttcaatca 224  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||| ||||||||| |||||||||||||||||| ||||||||||    
T  25494808 tccatatgaggagctctcaactcatgtttttcaatttgtgagattactattcttatggtaatttgatgagcgacttgcgaaaaatactaaatttcaatca 25494907  T
Q  225 atctttcaagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 284  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494908 atcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttc 25494967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 25494723 - 25494812
Alignment:
Q  15 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25494723 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctataggaatccat 25494812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 25678229 - 25678318
Alignment:
Q  15 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccat 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25678229 atttccaacagtaatatcttgtttccctctcgctttttactttgtatcccaatggtttcttaatgtataattctttctataggaatccat 25678318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 354 - 453
Target Start/End: Original strand, 25617842 - 25617938
Alignment:
Q  354 atcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataaataatgtatggattatccattccctcatagatatctttaagtcatc 453  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||   | | |||||||||||||||||||||||||||||||||    
T  25617842 atcttttgtagctgcttctaagtttgtgtatgcataatttgaagagagacat-aataatg--cgaagtatccattccctcatagatatctttaagtcatc 25617938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 25678314 - 25678383
Alignment:
Q  125 tccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgag 194  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  25678314 tccatatgaggagctctcaactcatgtttttcaacttgtgaaagtactattcttacggtaatttgatgag 25678383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 25650484 - 25650544
Alignment:
Q  341 ctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagag 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25650484 ctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaagagag 25650544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 1139 - 823
Alignment:
Q  15 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggc 114  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  1139 attttcaacagtaatatcttgtttccctctcgctttttactttgtatcccaatggtttctaaatgtatagttctttctataggactccattcaaaaaggc 1040  T
Q  115 atacttctcgtccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgagagacttgcgaaaaatactat 214  Q
    | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1039 acacttcttgtccatatgaggagctctcaactcgtgtttttcaactcgtgagagtactattcttacggtattttgatgagcgacttgcgaaaaatactat 940  T
Q  215 atttcaatcaatctttcaagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttaga 314  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939 atttcaatcaatcttttcagtgtagccttttgcaactattctttccttgtgtccttcattgcacactttctagacattggtagccttatgcttttttaga 840  T
Q  315 agggtgtcgagtttatg 331  Q
    |||||||||||||||||    
T  839 agggtgtcgagtttatg 823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 275
Target Start/End: Complemental strand, 8215 - 7955
Alignment:
Q  15 atttccaacagtaatatattgtttccctctcgctttttactttgtatcccaatggtttcttaatgtatagttctttctataggaatccattcaaaaaggc 114  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  8215 atttccaacagtaatatcttgtttccctctcacttttcactttgtatcccaatggtttctaaatgtatagttctttctataggactccattcaaaaaggc 8116  T
Q  115 atacttctcgtccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttacggtattttgatgagagacttgcgaaaaatactat 214  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  8115 atagttcttgtccatatgaggagctctcaactcgtgtttttcaacttgtgagagtactattcttatggtattttgatgagtgacttgcgaaaaatactat 8016  T
Q  215 atttcaatcaatctttcaagtgtagccttttgcaactattctttccttgtgtccttcattg 275  Q
    |||||||||||| |||  ||  |||||||||||||||||||||||||||||||||||||||    
T  8015 atttcaatcaatattttcagcttagccttttgcaactattctttccttgtgtccttcattg 7955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 341 - 434
Target Start/End: Complemental strand, 7827 - 7737
Alignment:
Q  341 ctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaaaagagacataaataatgtatggattatccattccctca 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  |||||||||||||||||||    
T  7827 ctttttgtttcttatcttttgtagctgcttctaagtttgtgtatgcataatttgaagagagacat-aataatg--tggattatccattccctca 7737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 331
Target Start/End: Complemental strand, 7930 - 7872
Alignment:
Q  273 ttgcacactttctagacattggtagccttatgcttttttagaagggtgtcgagtttatg 331  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7930 ttgcacactttctagacattggtagccttaggcttttttagaagggtgtcgagtttatg 7872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University